View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681_low_81 (Length: 203)
Name: NF1681_low_81
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_81 |
 | |
|
| [»] scaffold0419 (2 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0419 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 4229 - 4056
Alignment:
| Q |
16 |
cataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaa--tttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
4229 |
cataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgaaaaagattcataaaactttct |
4130 |
T |
|
| Q |
114 |
ctcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129 |
ctcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
4056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 14688 - 14527
Alignment:
| Q |
26 |
accactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaattttctcttatttaaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14688 |
accactttgtttagtagctagttccttacttgaagattcacctctgcaaatccaaagacaaatacatgcaaaagattcataaaattttctcttatttaaa |
14589 |
T |
|
| Q |
126 |
tcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588 |
tcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
14527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 28836554 - 28836393
Alignment:
| Q |
26 |
accactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaattttctcttatttaaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836554 |
accactttgtttagtagctagttccttacttgaagattcacctctgcaaatccaaagacaaatacatgcaaaagattcataaaattttctcttatttaaa |
28836455 |
T |
|
| Q |
126 |
tcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836454 |
tcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
28836393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 28779566 - 28779395
Alignment:
| Q |
17 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaa--ttttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
28779566 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgaaaaagattcataaaactttctc |
28779467 |
T |
|
| Q |
115 |
tcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28779466 |
tcttatttaaatcatatcaaatatat-tttatatttattaactttgcatgcaaatttcttcaatgttaatttt |
28779395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 28785604 - 28785433
Alignment:
| Q |
17 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaa--ttttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
28785604 |
ataaagatcaccactttgttttgcagctagttccatacttgaagattcaccactgcaaatccaaagacaaatacatgaaaaagattcataaaactttctc |
28785505 |
T |
|
| Q |
115 |
tcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28785504 |
tcttatttaaatcatatcaaatatat-tttatatttattaactttgcatgcaaatttcttcaatgttaatttt |
28785433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 6644 - 6815
Alignment:
| Q |
17 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaa--ttttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| || || |
|
|
| T |
6644 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgaaaaagtttgataaaactttctc |
6743 |
T |
|
| Q |
115 |
tcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6744 |
tcttattaaaatcatatcaaatatat-tttatatttattaactttgcatgcaaatttcttccatgttaatttt |
6815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 15389 - 15560
Alignment:
| Q |
17 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgcaaaagattcataaaa--ttttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| || || |
|
|
| T |
15389 |
ataaagatcaccactttgttttgcagctagttccttacttgaagattcaccactgcaaatccaaagacaaatacatgaaaaagtttgataaaactttctc |
15488 |
T |
|
| Q |
115 |
tcttatttaaatcatatcaaatatatgtttatatttattaactttgcatgcaaatttcttccatgttaatttt |
187 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15489 |
tcttattaaaatcatatcaaatatat-tttatatttattaactttgcatgcaaatttcttccatgttaatttt |
15560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12987 times since January 2019
Visitors: 8270