View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_82 (Length: 202)

Name: NF1681_low_82
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_82
NF1681_low_82
[»] chr1 (13 HSPs)
chr1 (16-187)||(28231437-28231608)
chr1 (48-187)||(28239042-28239181)
chr1 (65-187)||(47569149-47569271)
chr1 (61-187)||(677199-677325)
chr1 (69-127)||(6326786-6326844)
chr1 (65-127)||(14508844-14508906)
chr1 (76-139)||(21159167-21159230)
chr1 (65-127)||(671025-671087)
chr1 (69-148)||(2289006-2289082)
chr1 (50-107)||(23787015-23787072)
chr1 (50-107)||(24621795-24621852)
chr1 (77-125)||(28326317-28326365)
chr1 (65-106)||(4251618-4251659)
[»] chr5 (1 HSPs)
chr5 (65-127)||(1717879-1717941)
[»] chr3 (1 HSPs)
chr3 (53-127)||(47924945-47925019)
[»] chr2 (1 HSPs)
chr2 (65-128)||(9066272-9066335)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 28231437 - 28231608
Alignment:
Q  16 gaaaccaaaatatcgcatttctaatttcatgtggtgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatgaattatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28231437 gaaaccaaaatatcgcatttctaatttcatgtggtgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatgaattatat 28231536  T
Q  116 tctgaaatgatttatgttaacaacatcaagcctcattgtcacacatatagacatctaatctatggttattgc 187  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28231537 tctgaaatgatttatgttaacaacatcaagcctggttgtcacacatatagacatctaatctatggttattgc 28231608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 28239042 - 28239181
Alignment:
Q  48 ggtgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcc 147  Q
    |||||||||||| ||| |||| ||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||  ||    
T  28239042 ggtgttataattaaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccc 28239141  T
Q  148 tcattgtcacacatatagacatctaatctatggttattgc 187  Q
    | ||| |  ||||||||| |||||| ||||||||||||||    
T  28239142 tgattcttgcacatatagtcatctagtctatggttattgc 28239181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 47569149 - 47569271
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctcattgtcacacatata 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||| ||||| ||| |  |||||||     
T  47569149 atattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatcgagcctaattataccacatatc 47569248  T
Q  165 gacatctaatctatggttattgc 187  Q
     | |||||| |||||||||||||    
T  47569249 aaaatctaacctatggttattgc 47569271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 677199 - 677325
Alignment:
Q  61 aattatattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctcattgtcacaca 160  Q
    ||||||||| |||||||||||||||||||||||  | ||||||||||| |||||||||||||||||| |||||| ||| ||||| ||| ||| |||||||    
T  677199 aattatatttagactctgcaaagatagacttgtacatcaagcctatgatttatattctgaaatgattcatgttaccaaaatcaaccctgattttcacaca 677298  T
Q  161 tatagacatctaatctatggttattgc 187  Q
     || | |||||  ||||||| ||||||    
T  677299 cattgccatctcctctatggctattgc 677325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 6326844 - 6326786
Alignment:
Q  69 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatt 127  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  6326844 tcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt 6326786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 14508906 - 14508844
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatt 127  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  14508906 atattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgatt 14508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 21159230 - 21159167
Alignment:
Q  76 ctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaac 139  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||  || |||||||||||    
T  21159230 ctgcaaagatagacttataaaccaagcctatgatttatattctgaaattcttcatgttaacaac 21159167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 671087 - 671025
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatt 127  Q
    |||||||| || ||||||||||||||||| ||||||| |||||  ||||||| ||||||||||    
T  671087 atattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgatt 671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 2289082 - 2289006
Alignment:
Q  69 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcct 148  Q
    |||| ||| |||| ||||||||||| | |||||||||||| ||||||||| |||||||   |||||||||||||| ||||    
T  2289082 tcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcct 2289006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 23787015 - 23787072
Alignment:
Q  50 tgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatg 107  Q
    |||||||| ||||| |||||||| |||| |||||| |||||||| |||||||||||||    
T  23787015 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctatg 23787072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 24621852 - 24621795
Alignment:
Q  50 tgttataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatg 107  Q
    |||||||| ||||| |||||||| |||| |||||| |||||||| |||||||||||||    
T  24621852 tgttataactcaatcatattcaggctctccaaagaaagacttgtaaaccaagcctatg 24621795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 28326317 - 28326365
Alignment:
Q  77 tgcaaagatagacttgttaaccaagcctatgaattatattctgaaatga 125  Q
    ||||||||||||||| | |||||||| ||||| ||||||||||||||||    
T  28326317 tgcaaagatagacttataaaccaagcttatgatttatattctgaaatga 28326365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 4251659 - 4251618
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctat 106  Q
    |||| ||| |||||||||||||||||||| ||||||||||||    
T  4251659 atatccaggctctgcaaagatagacttgtaaaccaagcctat 4251618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 1717879 - 1717941
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatt 127  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  1717879 atattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgatt 1717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 47925019 - 47924945
Alignment:
Q  53 tataattcaattatattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatt 127  Q
    ||||| ||||| ||| |||  ||||||||||||||||| || || ||||||||||| || |||||||||||||||    
T  47925019 tataactcaatcatactcaccctctgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgatt 47924945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 9066272 - 9066335
Alignment:
Q  65 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgattt 128  Q
    ||||||||||| || |||| ||||| ||| |||||||||||||| ||||||||  |||||||||    
T  9066272 atattcagactatgtaaaggtagacctgtaaaccaagcctatgatttatattcacaaatgattt 9066335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 13397 times since January 2019
Visitors: 8302