View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_9 (Length: 427)
Name: NF1681_low_9
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 51 - 374
Target Start/End: Original strand, 45122349 - 45122673
Alignment:
| Q |
51 |
tcatccgtttgttaccgatttaaggaaaacaaaaatccaaacactagttcaaattagaagctgttttgagtagttcctccagaaaatcattttcgataac |
150 |
Q |
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| T |
45122349 |
tcatcagtttgttaccgatttaaggaaaacaaaaatccaaacactagttcaaattagaagctgttttgagtagttcctccagaaaatcattttcgataac |
45122448 |
T |
|
| Q |
151 |
tgatttcaaaatagaaagaaagnnnnnnn-tgtgattttcattatggtaatcaaacacaaaacaannnnnnnaaaatctctggatattaatctccaagag |
249 |
Q |
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| T |
45122449 |
tgatttaaaaatagaaagaaagaaaaaaaatgtgattttcattatggtaatcaaacgcaaaacaattttttgaaaatctctggatattaatctccaagag |
45122548 |
T |
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| Q |
250 |
tcgtttgttacaacttattttgtnnnnnnntttactttttctttaaatataatcactcctgaaaattttcatctgtttgttacagattctttaaaaaatg |
349 |
Q |
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| T |
45122549 |
tcgtttgttagaacttattttgtaaaaaaatttagtttttctttaaatataatcactcctgaaaattttcatctgtttgttacagattctttaaaaaatg |
45122648 |
T |
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| Q |
350 |
aaccaatctgaaaatattataaaaa |
374 |
Q |
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| T |
45122649 |
aaccaatctgaaaatattataaaaa |
45122673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 45122714 - 45122754
Alignment:
| Q |
369 |
taaaaataattttcagtaagtgattttgttttcggtaaaca |
409 |
Q |
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| T |
45122714 |
taaaaataattttcagtaagtgattttcttttcggtaaaca |
45122754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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