View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691_high_6 (Length: 421)

Name: NF1691_high_6
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691_high_6
NF1691_high_6
[»] chr2 (24 HSPs)
chr2 (23-409)||(10372194-10372580)
chr2 (70-405)||(10348119-10348454)
chr2 (22-386)||(10353468-10353841)
chr2 (74-210)||(10336367-10336503)
chr2 (59-397)||(9321312-9321659)
chr2 (72-212)||(9316558-9316698)
chr2 (65-208)||(8572958-8573101)
chr2 (25-212)||(9283603-9283790)
chr2 (70-212)||(9357710-9357852)
chr2 (140-212)||(9275051-9275123)
chr2 (240-405)||(9292259-9292421)
chr2 (70-297)||(9329035-9329271)
chr2 (70-178)||(7115110-7115218)
chr2 (246-393)||(9283833-9283980)
chr2 (240-302)||(9357614-9357676)
chr2 (143-211)||(12005658-12005726)
chr2 (61-212)||(9292458-9292609)
chr2 (239-302)||(10336275-10336338)
chr2 (240-405)||(9060772-9060937)
chr2 (142-198)||(8579032-8579088)
chr2 (143-190)||(11987021-11987068)
chr2 (145-188)||(16269456-16269499)
chr2 (143-212)||(9060666-9060735)
chr2 (244-297)||(9274948-9275001)
[»] scaffold0667 (1 HSPs)
scaffold0667 (70-398)||(4818-5149)
[»] chr4 (1 HSPs)
chr4 (52-386)||(26575220-26575563)
[»] chr3 (2 HSPs)
chr3 (238-386)||(37462845-37462993)
chr3 (58-199)||(37463041-37463182)
[»] chr8 (1 HSPs)
chr8 (74-211)||(41966185-41966322)
[»] chr1 (1 HSPs)
chr1 (241-302)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 23 - 409
Target Start/End: Complemental strand, 10372580 - 10372194
Alignment:
Q  23 aacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttca 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10372580 aacaccagcaacattgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttca 10372481  T
Q  123 ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372480 ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc 10372381  T
Q  223 cacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagc 322  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10372380 cacaatcagagcctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagc 10372281  T
Q  323 actttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttcagtat 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372280 actttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttcagtat 10372194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 70 - 405
Target Start/End: Complemental strand, 10348454 - 10348119
Alignment:
Q  70 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 169  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  170 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgacccc-acaatcaaagcctccttatgtgttcatggcttcggttttgattct 268  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  269 ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaact 368  Q
     ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | |||||||||||||||| ||  ||||||||||||  ||| | ||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccacaagtgagactcttcagcttgaaaacaaact 10348156  T
Q  369 cgtggaagataattcctactatgccgtacgttcttca 405  Q
    | ||||||||||||||| |||||||||||| ||||||    
T  10348155 catggaagataattcctgctatgccgtacgatcttca 10348119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 10353841 - 10353468
Alignment:
Q  22 caacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttc 121  Q
    ||||| || ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | ||||||    
T  10353841 caacagcaccaacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttc 10353742  T
Q  122 attaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct-- 216  Q
    |   | |||   | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||   ||||      
T  10353741 acgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctcc 10353642  T
Q  217 ----tgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcga 312  Q
        ||||  | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  ||||    
T  10353641 aatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcga 10353542  T
Q  313 ccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattccta 386  Q
     |  |||| | |||||||||||||||||||  ||||||||||||  ||| | ||||| |||||  |||||||||    
T  10353541 tctacaaaaccctttttatgatccacatgtcagactcttcagcttgaaaacaaactcatggaaagtaattccta 10353468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  74 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 173  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  174 aacatagggttatcccttttctccctcttcctattcc 210  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 397
Target Start/End: Complemental strand, 9321659 - 9321312
Alignment:
Q  59 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 158  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  159 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 249  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  250 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactc 349  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||  |||  |   |  || | | ||||||||||| |||||||  |||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactc 9321360  T
Q  350 ttcagctccaaagctaactcgtggaagataattcctactatgccgtac 397  Q
    |||||||| | | | ||||||||||| |||||||| | ||||||||||    
T  9321359 ttcagctctataacaaactcgtggaaaataattcccagtatgccgtac 9321312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  72 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 171  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  172 taaacatagggttatcccttttctccctcttcctattccta 212  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  65 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 164  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  165 acacccgtaaacatagggttatcccttttctccctcttcctatt 208  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  25 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 124  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  125 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 212  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  70 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 169  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  170 cgtaaacatagggttatcccttttctccctcttcctattccta 212  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  140 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 212  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 9292421 - 9292259
Alignment:
Q  240 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 339  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||   ||  |||||  ||   | |||||   ||||||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactctttt---gatccaca 9292325  T
Q  340 tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca 405  Q
     ||  ||||||||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||    
T  9292324 ggtgagactcttcagctccaaaactaactcgtggaaaatcattcctagtatgccgtacgctcttca 9292259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 297
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  70 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 169  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  170 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 260  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  261 ttgattctttatccggcgattacaaactcctcagaat 297  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  70 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 169  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  170 cgtaaacat 178  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 9283833 - 9283980
Alignment:
Q  246 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcg 345  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||   || |    |  |||| | |||||||| || ||||||   |    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgccag 9283932  T
Q  346 actcttcagctccaaagctaactcgtggaagataattcctactatgcc 393  Q
    |||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  9283933 actcttcagctccaaaacaaactcgtggaaaataattcctattatgcc 9283980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  240 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 302  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  143 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 211  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  61 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 160  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  161 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 212  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  239 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 302  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 405
Target Start/End: Original strand, 9060772 - 9060937
Alignment:
Q  240 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 339  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||  |||  ||| | |  |  |||| || |||||||||| ||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcaca 9060871  T
Q  340 tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca 405  Q
    |||  | ||||| ||||  ||| | ||||||||||| | |||||| | ||||||||||| ||||||    
T  9060872 tgtcagtctctttagcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttca 9060937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  142 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 198  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  143 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 190  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  145 aatcacattctggaaccctaacacccgtaaacatagggttatcc 188  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  143 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 212  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  244 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 297  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 70 - 398
Target Start/End: Complemental strand, 5149 - 4818
Alignment:
Q  70 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 169  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  170 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 265  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  266 tctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagcta 365  Q
     ||||| |||||||||||||| |||||||| | ||||  ||| ||   |  |||| | |||||||||||||||||||| ||||||| ||||  ||| | |    
T  4950 cctttaaccggcgattacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttagactctttagcttgaaaacca 4851  T
Q  366 actcgtggaagataattcctactatgccgtacg 398  Q
    |||||||||| ||||||||||||||||||||||    
T  4850 actcgtggaaaataattcctactatgccgtacg 4818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 52 - 386
Target Start/End: Complemental strand, 26575563 - 26575220
Alignment:
Q  52 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 151  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  152 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 241  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  242 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatg 341  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatg 26575265  T
Q  342 ttcgactcttcagctccaaagctaactcgtggaagataattccta 386  Q
    || ||||||||||||  ||| | ||||| ||||| ||||||||||    
T  26575264 ttagactcttcagcttgaaaacaaactcatggaaaataattccta 26575220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 37462993 - 37462845
Alignment:
Q  238 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatcca 337  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||   |  |||| |  |||| | ||||||||||||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttggcttctcgatctacaaaaccctttttatgatcca 37462894  T
Q  338 catgttcgactcttcagctccaaagctaactcgtggaagataattccta 386  Q
    |||||  ||||||||||||||||| | ||||||||||| ||| ||||||    
T  37462893 catgtgagactcttcagctccaaaacaaactcgtggaaaatagttccta 37462845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q  58 caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 157  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  37463182 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 37463083  T
Q  158 aaccctaacacccgtaaacatagggttatcccttttctccct 199  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  37463082 aaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  74 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 173  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  174 aacatagggttatcccttttctccctcttcctattcct 211  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  241 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 302  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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