View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691_low_6 (Length: 421)
Name: NF1691_low_6
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1691_low_6 |
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[»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 24)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 23 - 409
Target Start/End: Complemental strand, 10372580 - 10372194
Alignment:
Q |
23 |
aacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttca |
122 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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T |
10372580 |
aacaccagcaacattgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttca |
10372481 |
T |
|
Q |
123 |
ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc |
222 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
10372480 |
ttaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccc |
10372381 |
T |
|
Q |
223 |
cacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagc |
322 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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T |
10372380 |
cacaatcagagcctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagc |
10372281 |
T |
|
Q |
323 |
actttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttcagtat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
10372280 |
actttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttcagtat |
10372194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 70 - 405
Target Start/End: Complemental strand, 10348454 - 10348119
Alignment:
Q |
70 |
tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc |
169 |
Q |
|
|
||||||||||||||||||||||||||||||||||| || | ||| ||||| | ||| ||| ||| ||||||||| ||||||||||||||||| |
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T |
10348454 |
tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc |
10348355 |
T |
|
Q |
170 |
cgtaaacatagggttatcccttttctccctcttcctattcctattcttgacccc-acaatcaaagcctccttatgtgttcatggcttcggttttgattct |
268 |
Q |
|
|
||||||||| ||||||||||||||||||||||||||||||||||| || | || | |||| ||||||||| ||||| ||||||||||||||| |
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T |
10348354 |
cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa |
10348256 |
T |
|
Q |
269 |
ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaact |
368 |
Q |
|
|
||||||| |||||||||||||||||||| ||| ||||| |||| | || | | |||||||||||||||| || |||||||||||| ||| | |||| |
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|
T |
10348255 |
atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccacaagtgagactcttcagcttgaaaacaaact |
10348156 |
T |
|
Q |
369 |
cgtggaagataattcctactatgccgtacgttcttca |
405 |
Q |
|
|
| ||||||||||||||| |||||||||||| |||||| |
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|
T |
10348155 |
catggaagataattcctgctatgccgtacgatcttca |
10348119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 10353841 - 10353468
Alignment:
Q |
22 |
caacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttc |
121 |
Q |
|
|
||||| || ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| | | |||||| |
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T |
10353841 |
caacagcaccaacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttc |
10353742 |
T |
|
Q |
122 |
attaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct-- |
216 |
Q |
|
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| | ||| | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |||| |||| |
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|
T |
10353741 |
acgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctcc |
10353642 |
T |
|
Q |
217 |
----tgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcga |
312 |
Q |
|
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|||| | | | | | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||| |
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|
T |
10353641 |
aatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcga |
10353542 |
T |
|
Q |
313 |
ccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattccta |
386 |
Q |
|
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| |||| | ||||||||||||||||||| |||||||||||| ||| | ||||| ||||| ||||||||| |
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|
T |
10353541 |
tctacaaaaccctttttatgatccacatgtcagactcttcagcttgaaaacaaactcatggaaagtaattccta |
10353468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q |
74 |
ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta |
173 |
Q |
|
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|||||||| || |||||||||||||||||||| ||| || ||||||||| |||||||| | ||||||||||| ||||||| || |||| || ||||| |
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T |
10336503 |
ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta |
10336404 |
T |
|
Q |
174 |
aacatagggttatcccttttctccctcttcctattcc |
210 |
Q |
|
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||||| || ||||||||| |||||||||||||||||| |
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|
T |
10336403 |
aacatcggattatcccttatctccctcttcctattcc |
10336367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 397
Target Start/End: Complemental strand, 9321659 - 9321312
Alignment:
Q |
59 |
accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga |
158 |
Q |
|
|
|||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | ||| ||||||| ||||||||| |||||| |
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|
T |
9321659 |
accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga |
9321560 |
T |
|
Q |
159 |
accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca |
249 |
Q |
|
|
|||||| ||| ||||| ||| | | |||||||| || ||||||||||| ||| ||| | || || |||| |||| || || |||||| ||||| |
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|
T |
9321559 |
accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca |
9321460 |
T |
|
Q |
250 |
tggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactc |
349 |
Q |
|
|
||| |||||||||||| ||||| ||||||||||||||||||||||||| |||| ||| | | || | | ||||||||||| ||||||| ||||| |
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|
T |
9321459 |
tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactc |
9321360 |
T |
|
Q |
350 |
ttcagctccaaagctaactcgtggaagataattcctactatgccgtac |
397 |
Q |
|
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|||||||| | | | ||||||||||| |||||||| | |||||||||| |
|
|
T |
9321359 |
ttcagctctataacaaactcgtggaaaataattcccagtatgccgtac |
9321312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q |
72 |
tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg |
171 |
Q |
|
|
||||||||||||||||||| |||||||| ||||| || || |||||||||| | |||| | | |||| ||||||||| ||||||||||||||||||| |
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|
T |
9316698 |
tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg |
9316599 |
T |
|
Q |
172 |
taaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
||||||| | |||||||||| || |||||| |||| |||| |
|
|
T |
9316598 |
taaacatcgtattatccctttccttcctcttgctatcccta |
9316558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q |
65 |
actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta |
164 |
Q |
|
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|||| |||||||||||||||||||||||||||||| || || || | ||||||| | | | ||| |||| |||| ||||| || |||||||||||| |
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|
T |
8572958 |
actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta |
8573057 |
T |
|
Q |
165 |
acacccgtaaacatagggttatcccttttctccctcttcctatt |
208 |
Q |
|
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
T |
8573058 |
acacccgtaaacatcacattatcccttttctccctcttcctatt |
8573101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q |
25 |
caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt |
124 |
Q |
|
|
||||| ||||||||| |||||| | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| ||| | | ||||| | |
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|
T |
9283603 |
caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg |
9283702 |
T |
|
Q |
125 |
aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
| || ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||| |
|
|
T |
9283703 |
catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta |
9283790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q |
70 |
tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc |
169 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||| || ||||||||| | ||| | | |||| |||||| || ||||||||| ||||| | |
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|
T |
9357852 |
tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc |
9357753 |
T |
|
Q |
170 |
cgtaaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
||||||||| |||||||||| |||||||||||||| |||| |
|
|
T |
9357752 |
cgtaaacatcacattatccctttcctccctcttcctatcccta |
9357710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q |
140 |
aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
|||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||| |
|
|
T |
9275123 |
aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta |
9275051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 9292421 - 9292259
Alignment:
Q |
240 |
tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca |
339 |
Q |
|
|
|||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| |||| || ||||| || | ||||| |||||||| |
|
|
T |
9292421 |
tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactctttt---gatccaca |
9292325 |
T |
|
Q |
340 |
tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca |
405 |
Q |
|
|
|| ||||||||||||||||| ||||||||||||| || ||||||| ||||||||||| |||||| |
|
|
T |
9292324 |
ggtgagactcttcagctccaaaactaactcgtggaaaatcattcctagtatgccgtacgctcttca |
9292259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 297
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q |
70 |
tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc |
169 |
Q |
|
|
|||||||||||| ||||||||| | || |||||| | ||| || ||||||| | ||||| | |||||| ||||||||| ||||||||||||||||| |
|
|
T |
9329271 |
tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc |
9329172 |
T |
|
Q |
170 |
cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt |
260 |
Q |
|
|
||||||||| | |||||||||| || |||||| |||| |||| ||||||| | ||| || || ||||||||| ||||| || ||||||| |
|
|
T |
9329171 |
cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt |
9329072 |
T |
|
Q |
261 |
ttgattctttatccggcgattacaaactcctcagaat |
297 |
Q |
|
|
||||| |||||||||| |||||||||||||||||||| |
|
|
T |
9329071 |
ttgatcctttatccggtgattacaaactcctcagaat |
9329035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q |
70 |
tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc |
169 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||| || ||||||| | | ||| | || | | |||||||||| |||||||| |||||||| |
|
|
T |
7115110 |
tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc |
7115209 |
T |
|
Q |
170 |
cgtaaacat |
178 |
Q |
|
|
||||||||| |
|
|
T |
7115210 |
cgtaaacat |
7115218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 9283833 - 9283980
Alignment:
Q |
246 |
ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcg |
345 |
Q |
|
|
|||| ||||||||||||||| ||||| |||||||||||||||||||| |||| |||| || | | |||| | |||||||| || |||||| | |
|
|
T |
9283833 |
ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgccag |
9283932 |
T |
|
Q |
346 |
actcttcagctccaaagctaactcgtggaagataattcctactatgcc |
393 |
Q |
|
|
|||||||||||||||| | ||||||||||| |||||||||| |||||| |
|
|
T |
9283933 |
actcttcagctccaaaacaaactcgtggaaaataattcctattatgcc |
9283980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q |
240 |
tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt |
302 |
Q |
|
|
|||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
T |
9357676 |
tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt |
9357614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q |
143 |
gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct |
211 |
Q |
|
|
|||||||| |||||||||||||||| |||||||||| || |||||||| ||||||| ||||||||||| |
|
|
T |
12005658 |
gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct |
12005726 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q |
61 |
catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac |
160 |
Q |
|
|
|||| ||| ||| |||||||||||||||||||||||||| ||||| || || || |||| | |||| | ||| || ||||||||| ||| |||| |
|
|
T |
9292609 |
catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac |
9292510 |
T |
|
Q |
161 |
cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
|||||||| | ||||||| || |||||||||||||||||||| |||| |||| |
|
|
T |
9292509 |
cctaacactcataaacatcggattatcccttttctccctcttgctatcccta |
9292458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q |
239 |
ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt |
302 |
Q |
|
|
||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
T |
10336338 |
ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt |
10336275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 405
Target Start/End: Original strand, 9060772 - 9060937
Alignment:
Q |
240 |
tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca |
339 |
Q |
|
|
|||| ||||| ||||||||||||||| | || ||| ||||||||||||||||||||| ||| ||| | | | |||| || |||||||||| |||| |
|
|
T |
9060772 |
tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcaca |
9060871 |
T |
|
Q |
340 |
tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca |
405 |
Q |
|
|
||| | ||||| |||| ||| | ||||||||||| | |||||| | ||||||||||| |||||| |
|
|
T |
9060872 |
tgtcagtctctttagcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttca |
9060937 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q |
142 |
tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc |
198 |
Q |
|
|
||||||| | |||||||||||||||| |||||||||| | |||||||||| |||||| |
|
|
T |
8579032 |
tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc |
8579088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q |
143 |
gaaatcacattctggaaccctaacacccgtaaacatagggttatccct |
190 |
Q |
|
|
|||||| | ||||||||||||||||||||||||||| || |||||||| |
|
|
T |
11987021 |
gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct |
11987068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q |
145 |
aatcacattctggaaccctaacacccgtaaacatagggttatcc |
188 |
Q |
|
|
||||||||||||||||||||||||| |||||||| || |||||| |
|
|
T |
16269499 |
aatcacattctggaaccctaacacctgtaaacattggattatcc |
16269456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q |
143 |
gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta |
212 |
Q |
|
|
|||| |||| ||||||||||||||||||| ||| || || ||||||||| ||||||||||||| |||| |
|
|
T |
9060666 |
gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta |
9060735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q |
244 |
tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat |
297 |
Q |
|
|
|||||| || || ||||||||| |||||||||||||||| ||||| |||||||| |
|
|
T |
9275001 |
tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat |
9274948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 70 - 398
Target Start/End: Complemental strand, 5149 - 4818
Alignment:
Q |
70 |
tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc |
169 |
Q |
|
|
|||||||||||||||||||||||||||| | ||||||||| || ||||| ||| | ||| | | |||| ||||||||| ||||||||||||||| | |
|
|
T |
5149 |
tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc |
5050 |
T |
|
Q |
170 |
cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat |
265 |
Q |
|
|
||||||||| ||||||||||||||||||| |||||| || |||| | || ||| | || ||||||||| ||||| ||||||||||||||| |
|
|
T |
5049 |
cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat |
4951 |
T |
|
Q |
266 |
tctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagcta |
365 |
Q |
|
|
||||| |||||||||||||| |||||||| | |||| ||| || | |||| | |||||||||||||||||||| ||||||| |||| ||| | | |
|
|
T |
4950 |
cctttaaccggcgattacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttagactctttagcttgaaaacca |
4851 |
T |
|
Q |
366 |
actcgtggaagataattcctactatgccgtacg |
398 |
Q |
|
|
|||||||||| |||||||||||||||||||||| |
|
|
T |
4850 |
actcgtggaaaataattcctactatgccgtacg |
4818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 52 - 386
Target Start/End: Complemental strand, 26575563 - 26575220
Alignment:
Q |
52 |
taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca |
151 |
Q |
|
|
|||||||||| | |||| |||||||||||||||||||||||||||||| ||| ||||| | | ||||||| | || | |||||| |||||| || |
|
|
T |
26575563 |
taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca |
26575464 |
T |
|
Q |
152 |
ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta |
241 |
Q |
|
|
||||||||||| ||||| ||||| || || |||||||||||||||||||||| || |||| |||| |||| | | |||| || | |||| |
|
|
T |
26575463 |
atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta |
26575365 |
T |
|
Q |
242 |
tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatg |
341 |
Q |
|
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||| | |||||||||||||||||| |
|
|
T |
26575364 |
tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatg |
26575265 |
T |
|
Q |
342 |
ttcgactcttcagctccaaagctaactcgtggaagataattccta |
386 |
Q |
|
|
|| |||||||||||| ||| | ||||| ||||| |||||||||| |
|
|
T |
26575264 |
ttagactcttcagcttgaaaacaaactcatggaaaataattccta |
26575220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 238 - 386
Target Start/End: Complemental strand, 37462993 - 37462845
Alignment:
Q |
238 |
cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatcca |
337 |
Q |
|
|
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||| | |||| | |||||||||||||| |
|
|
T |
37462993 |
cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttggcttctcgatctacaaaaccctttttatgatcca |
37462894 |
T |
|
Q |
338 |
catgttcgactcttcagctccaaagctaactcgtggaagataattccta |
386 |
Q |
|
|
||||| ||||||||||||||||| | ||||||||||| ||| |||||| |
|
|
T |
37462893 |
catgtgagactcttcagctccaaaacaaactcgtggaaaatagttccta |
37462845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q |
58 |
caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg |
157 |
Q |
|
|
||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || ||||||||| | ||| | | |||| ||||||||| ||||| |
|
|
T |
37463182 |
caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg |
37463083 |
T |
|
Q |
158 |
aaccctaacacccgtaaacatagggttatcccttttctccct |
199 |
Q |
|
|
||||||||||| ||||||||| | ||||||||||||||||| |
|
|
T |
37463082 |
aaccctaacacacgtaaacatctgattatcccttttctccct |
37463041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q |
74 |
ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta |
173 |
Q |
|
|
||||||||||||||||||||| ||||||||| ||| || ||| |||| |||||||| ||| |||||||||||||||||||||||||||| | ||| |
|
|
T |
41966185 |
ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta |
41966284 |
T |
|
Q |
174 |
aacatagggttatcccttttctccctcttcctattcct |
211 |
Q |
|
|
||||| || ||||||||||||||||| ||||||||||| |
|
|
T |
41966285 |
aacatcggattatcccttttctccctattcctattcct |
41966322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q |
241 |
atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt |
302 |
Q |
|
|
||||||||| ||||| ||||||||| | ||| || ||||||||||||||||||||| |||| |
|
|
T |
29452951 |
atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt |
29453012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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