View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-1 (Length: 181)
Name: NF1711-Insertion-1
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-1 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 31190427 - 31190601
Alignment:
| Q |
7 |
aatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaattgaagatacgtgatttaagattgattatctag |
106 |
Q |
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| T |
31190427 |
aatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaattgaagatacgtgatttaagattgattatctag |
31190526 |
T |
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| Q |
107 |
tattctttatttatttttgttttaaaatgtctatcagaaactcacacacattaagtgtaaagtgcatagtcgtag |
181 |
Q |
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| T |
31190527 |
tattctttatttatttttgttttaaaatgtctatcagaaactcacacacattaagtgtaaagtgcatagtcgtag |
31190601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 31202215 - 31202327
Alignment:
| Q |
14 |
acaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaa-ttgaagatacgtgatttaagattgattatctagtattct |
112 |
Q |
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| T |
31202215 |
acaaacattaatatcatcaaagacatgctaaaatatgaataatcattttaggttaaaaaatttgaagacgcatgatttaagattgattatctagtatttt |
31202314 |
T |
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| Q |
113 |
ttatttatttttg |
125 |
Q |
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| T |
31202315 |
ttatttatttttg |
31202327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 31172686 - 31172803
Alignment:
| Q |
14 |
acaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaa-attgaagatacgtgatttaagattgattatctagtattct |
112 |
Q |
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| T |
31172686 |
acaaacattaatgttctcaaagacatgctaaaatataaat---cattttaggttaaaaatatggaagacacgtgatttaagattgattatctagtattat |
31172782 |
T |
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| Q |
113 |
ttatttatttttgttttaaaa |
133 |
Q |
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| T |
31172783 |
ttatttatttttgtttaaaaa |
31172803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 31151236 - 31151384
Alignment:
| Q |
20 |
attaatgtcatcgaagacatgttaaaatgtaaataatcatttt----aggttaaaaaattgaagatacgtgatttaagattgattatctagta------t |
109 |
Q |
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| T |
31151236 |
attaatgtcaccaaagacatgctaaaatataaataatcattttctttatgttaaaaaattgaagactcgtgatttaagattgattatctagtattttttt |
31151335 |
T |
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| Q |
110 |
tctttatttatttttgttttaaaatgtctatca--gaaactcacacaca |
156 |
Q |
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| T |
31151336 |
tatttttttatttttgtttcaaaatgtctataagtgaaactcacacaca |
31151384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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