View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711-Insertion-10 (Length: 585)

Name: NF1711-Insertion-10
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711-Insertion-10
NF1711-Insertion-10
[»] chr5 (6 HSPs)
chr5 (7-585)||(41886595-41887173)
chr5 (442-529)||(41888933-41889019)
chr5 (194-253)||(28695710-28695769)
chr5 (194-254)||(28673460-28673520)
chr5 (33-73)||(41900508-41900548)
chr5 (336-393)||(41900799-41900856)
[»] chr4 (11 HSPs)
chr4 (186-306)||(7308311-7308431)
chr4 (191-281)||(8186543-8186633)
chr4 (202-281)||(7225346-7225425)
chr4 (203-275)||(532608-532680)
chr4 (10-73)||(21833268-21833331)
chr4 (10-67)||(553767-553824)
chr4 (206-255)||(1518820-1518869)
chr4 (186-254)||(1481563-1481631)
chr4 (345-389)||(1601177-1601221)
chr4 (41-73)||(3437642-3437674)
chr4 (340-380)||(53761152-53761192)
[»] chr7 (2 HSPs)
chr7 (420-495)||(10615252-10615326)
chr7 (11-73)||(10615715-10615777)
[»] chr6 (4 HSPs)
chr6 (186-281)||(9411909-9412004)
chr6 (11-73)||(6423907-6423969)
chr6 (19-73)||(8913420-8913474)
chr6 (11-67)||(19633108-19633164)
[»] chr8 (3 HSPs)
chr8 (203-281)||(18314833-18314911)
chr8 (97-158)||(18314716-18314777)
chr8 (337-391)||(18314967-18315021)
[»] chr3 (2 HSPs)
chr3 (11-73)||(51763382-51763444)
chr3 (345-391)||(51763737-51763783)
[»] chr1 (2 HSPs)
chr1 (10-74)||(19467422-19467486)
chr1 (41-73)||(17352692-17352724)


Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 585
Target Start/End: Original strand, 41886595 - 41887173
Alignment:
Q  7 attattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtttgaatgtgcaatttatttatagtactgatctat 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41886595 attattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgttagaatgtgcaatttatttatagtactgacctat 41886694  T
Q  107 tcctcatctctgattgtttccctttgctggaagacctcgacctcagtgacccgatacaatgcgtacgctatgatgaggcagagcctctttcactggcact 206  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41886695 tcctcatctctggttgtttccctttgctggaagacctcgacctcagtgacccgatacaatgtgtacgctatgatgaggcagagcctctttcactggcact 41886794  T
Q  207 tttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886795 tttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatc 41886894  T
Q  307 ttgcgtgactgttatcgcataacggaggttggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttccaatcctcacactagaa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41886895 ttgcgtgactgttatcgcataacggaggttggtattgtttctgctctccgggaaagaccaacattgaagtctttatccatttccaatccttacactagaa 41886994  T
Q  407 atctaacacatattacttcacattttattgacagcttggtaagtttgaaaggacttgacttgtcttgatttgtggtttttgaatatctcggatgagttgc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886995 atctaacacatattacttcacattttattgacagcttggtaagtttgaaaggacttgacttgtcttgatttgtggtttttgaatatctcggatgagttgc 41887094  T
Q  507 tttcatcttttgcaatggaaggtcctcctgacgaggcttaccttctgaaattgcagaggcaatagttacctcggaatat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41887095 tttcatcttttgcaatggaaggtcctcctgacgaggcttaccttctgaaattgcagaggcaatagttacttcggaatat 41887173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 529
Target Start/End: Original strand, 41888933 - 41889019
Alignment:
Q  442 ttggtaagtttgaaaggacttgacttgtcttgatttgtggtttttgaatatctcggatgagttgctttcatcttttgcaatggaaggt 529  Q
    ||||| |||||||| | |||||||||||||||||||||  | |||||||||||| |||||| ||||||| ||| |||||||| |||||    
T  41888933 ttggtgagtttgaa-gtacttgacttgtcttgatttgttttctttgaatatctccgatgagatgctttcctctattgcaatgcaaggt 41889019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 28695710 - 28695769
Alignment:
Q  194 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacg 253  Q
    ||||| || |||||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  28695710 tttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacg 28695769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 28673460 - 28673520
Alignment:
Q  194 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 254  Q
    ||||| || |||||||||||||  | |||||||||||||||  ||||||||||||||||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacga 28673520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 41900508 - 41900548
Alignment:
Q  33 ttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  41900508 tttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 41900799 - 41900856
Alignment:
Q  336 tggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttccaat 393  Q
    |||| ||| ||||||||||||| | ||||||||||||| |||||||||  ||||||||    
T  41900799 tggtcttgcttctgctctccgccagagaccaacattgaggtctttatcattttccaat 41900856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 7308431 - 7308311
Alignment:
Q  186 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaaga 285  Q
    |||| ||||||||| || |||||||||||| || ||||| ||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||  |     
T  7308431 agaggctctttcacgggaacttttcaaactccgcaaggtaaatctctctcgtcatcggtacatcaacaataggttgcttttccacttgtttaagaattgt 7308332  T
Q  286 gagtttctggaagaggtcatc 306  Q
     || |||||||||||| ||||    
T  7308331 aagcttctggaagaggccatc 7308311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 8186543 - 8186633
Alignment:
Q  191 ctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 281  Q
    |||||||| |||||||||||||||| || ||||||||||| |||| |||| |||| |||||||| | |||||||||  ||||||| |||||    
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaa 8186633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 7225346 - 7225425
Alignment:
Q  202 gcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 281  Q
    |||||||||||||| || | ||||||||||||| ||||| | |||||||| |||  |||||||||| | |||||||||||    
T  7225346 gcacttttcaaactccgtagggttaatctctctggtcatgaatacatcaatgatgaattgcttttccatttgtttaagaa 7225425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 532680 - 532608
Alignment:
Q  203 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtt 275  Q
    ||||||||||||| || ||||||||||| |||| |||| |||||||||||||   || ||||||| |||||||    
T  532680 cacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgtt 532608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 21833268 - 21833331
Alignment:
Q  10 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    |||||| || |||||||| ||||||||||  |||| ||||| |||||||||||||||| |||||    
T  21833268 attcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 553824 - 553767
Alignment:
Q  10 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctca 67  Q
    |||||| ||||||||||| ||| |||  || |||| ||||||||||||||||||||||    
T  553824 attcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 1518820 - 1518869
Alignment:
Q  206 ttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgat 255  Q
    |||||||||| || ||| |||||||| ||||||||||||| |||||||||    
T  1518820 ttttcaaactccggaagtttaatctcactagtcatcactatatcaacgat 1518869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 1481631 - 1481563
Alignment:
Q  186 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 254  Q
    |||| |||||||| ||||||| |||||||| || ||| |||||||||||  |||| ||||| |||||||    
T  1481631 agaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacga 1481563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 1601221 - 1601177
Alignment:
Q  345 ttctgctctccgcgaaagaccaacattgaagtctttatccatttc 389  Q
    |||||||||||| || ||||||||||||| |||||||||| ||||    
T  1601221 ttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 3437642 - 3437674
Alignment:
Q  41 aaaagattacaactttgacctctctcatttgtt 73  Q
    ||||||||||||||||||||||||||| |||||    
T  3437642 aaaagattacaactttgacctctctcagttgtt 3437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 53761152 - 53761192
Alignment:
Q  340 attgtttctgctctccgcgaaagaccaacattgaagtcttt 380  Q
    |||| |||||||||||| |||||||||||||||| ||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtcttt 53761192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 10615326 - 10615252
Alignment:
Q  420 tacttcacattttattgacagcttggtaagtttgaaaggacttgacttgtcttgatttgtggtttttgaatatctc 495  Q
    |||||||||||||||||||   ||||| |||||||| || |||||||||||||||||||  |||| ||||||||||    
T  10615326 tacttcacattttattgactcattggtgagtttgaaggg-cttgacttgtcttgatttgcagtttatgaatatctc 10615252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10615777 - 10615715
Alignment:
Q  11 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    ||||| ||||||||||  ||| |||  || ||||||||||||||||||||||||||| |||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 9412004 - 9411909
Alignment:
Q  186 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 281  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  9412004 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 9411909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  11 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    ||||||||||||||||| ||| |||  || |||| || ||||||||||||||||||| |||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 8913420 - 8913474
Alignment:
Q  19 aatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    |||||||||  ||||||  | |||||||||||||||||||||||||||| |||||    
T  8913420 aatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 19633164 - 19633108
Alignment:
Q  11 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctca 67  Q
    ||||||||||||||||| ||| |||  || |||  ||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctca 19633108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 18314833 - 18314911
Alignment:
Q  203 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 281  Q
    ||||||||||||| |||||||||||| || ||  |||| ||||||||||||||  || ||||||| ||||||| |||||    
T  18314833 cacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaa 18314911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 18314716 - 18314777
Alignment:
Q  97 actgatctattcctcatctctgattgtttccctttgctggaagacctcgacctcagtgaccc 158  Q
    |||||||| ||||||||  ||||||||||||||||||| ||||| |||||||| ||| ||||    
T  18314716 actgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccc 18314777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
Q  337 ggtattgtttctgctctccgcgaaagaccaacattgaagtctttatccatttcca 391  Q
    ||||||| || ||||||||| || |||||||| |||| |||||||||||||||||    
T  18314967 ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca 18315021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 51763382 - 51763444
Alignment:
Q  11 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 73  Q
    |||| |||||||||||| |||||||| |  ||||||||||||||||||| ||||||| |||||    
T  51763382 ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgtt 51763444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 51763737 - 51763783
Alignment:
Q  345 ttctgctctccgcgaaagaccaacattgaagtctttatccatttcca 391  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||||    
T  51763737 ttctgctctccgtgaaagaccaacattgacgtctttatccttttcca 51763783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 19467422 - 19467486
Alignment:
Q  10 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgttt 74  Q
    |||||| ||||||||||| |||||||  |  |||| |||||||||||||||||||||| ||||||    
T  19467422 attcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgttt 19467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 17352724 - 17352692
Alignment:
Q  41 aaaagattacaactttgacctctctcatttgtt 73  Q
    ||||||||||||| |||||||||||||||||||    
T  17352724 aaaagattacaacattgacctctctcatttgtt 17352692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 14005 times since January 2019
Visitors: 8375