View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-11 (Length: 886)
Name: NF1711-Insertion-11
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 640; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 64 - 879
Target Start/End: Original strand, 30737111 - 30737911
Alignment:
| Q |
64 |
tttgatcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctagactctatggaagcatctctatgctaggattcaacaaggcatctc |
163 |
Q |
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| T |
30737111 |
tttgttcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctaaactctatggaagcatctctatgctaggattcaacaaggaatggc |
30737210 |
T |
|
| Q |
164 |
tctacatctggttgaacagaagttgcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
263 |
Q |
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| T |
30737211 |
a-tccatt--------cagaagttgcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
30737301 |
T |
|
| Q |
264 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaa |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30737302 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaa |
30737401 |
T |
|
| Q |
364 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaatt |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
30737402 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacat--------gtaaacactatggaatgaatt |
30737493 |
T |
|
| Q |
464 |
catcattgaagcaaggacacaaaatctattggaagcctccaatacaaaagaagcatcatagatgttttatatacatc-atgttaaattatgccttgaccc |
562 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| | |
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| T |
30737494 |
catccttgaagcaaggacacgaaatctattggaagcctccaatacaaaagaagtatcatagatgttttatatacatccatgttaacttatgccttgactc |
30737593 |
T |
|
| Q |
563 |
aagcataataagtcatgtctgtgaagatccttcactcagatatcagattcctccacttcagcatagagaaagactctatttaagtgtgtcaaatttgcat |
662 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
30737594 |
aagcataataagtcatgtctgtgaagatccttcactcatatatcagactcgtccacttcagcatagagaaagcctctatttaagtgtgtcaaatttacat |
30737693 |
T |
|
| Q |
663 |
caagaaataccttcttgataaatgcacaaacttgttgagattactacgtactcaatacaaaggaaaaatttccttttcaaaataaaaaaccctacaaaat |
762 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30737694 |
caagaaataccttcttgataaatgcagaaacttgttgagattactacgtactcaatacaaaggaaaaatttcctcttcaaaataaaaaaccctacaaaat |
30737793 |
T |
|
| Q |
763 |
ttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggat-aaatgatctttgaaaatcca |
861 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30737794 |
ttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatcca |
30737893 |
T |
|
| Q |
862 |
cttcttcaattaacttca |
879 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
30737894 |
cttcttcaattaacttca |
30737911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 30736991 - 30737065
Alignment:
| Q |
4 |
aacagtagaaaatcataaacatgtaagaaccaaatagtttct-------attcttttacattgatgttttgatca |
71 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
30736991 |
aacagtagaaaatcataaacatgtaagaaccaaatagttcctatggacaattctcttacattgatgttttgatca |
30737065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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