View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711-Insertion-12 (Length: 870)
Name: NF1711-Insertion-12
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 137 - 778
Target Start/End: Original strand, 16846352 - 16847000
Alignment:
| Q |
137 |
tgttaagtgaaaggcta---tgcaacattctttttacctcgcgtcacgagctatatacttgcattgggaagtattactcacgtcgcgggacaaccttccc |
233 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
16846352 |
tgttaagtgaaaggctaatatgcaacattctttttacctcgcgtcacgagctatatacttgcgttgggaggtattactcacgtcgcgggagaaccttccc |
16846451 |
T |
|
| Q |
234 |
taaattttagggaaaagtgtgcctatataaggcagacccctaggttagtttaaaaaacacaccttttgatgagccgacgacggcataaacgcaaattcgg |
333 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
16846452 |
taaattttagggaaatgtgcgcctatataaggcagacccctaggttagtttaaaaaacac--cttttgatgagccgacgac---ataaacgcaaattcgg |
16846546 |
T |
|
| Q |
334 |
catattacgagcgacgagagccattcgtgagcaaaggaatcgtc---------tccagtgatctttttcttgtctttcgttatacatatttattagttta |
424 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| || |||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
16846547 |
catattacgagcgaccaaagccattcgtgagcaaaggaatcatcaactagtgatccaatgatctttttcatatctttcgttatacatatttattagttta |
16846646 |
T |
|
| Q |
425 |
atttgtgtttaagaatcatgagtagataattctctccatgttatttcatgcaagaggaacctctctgtaattgtttgattatgtaactttaaactgttct |
524 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16846647 |
atttgtgtttaagaaacatgagtagataattctctctatgttatttcgtgcaagaggaacctctctgtaattgtttgattatgtaactttaaattgttct |
16846746 |
T |
|
| Q |
525 |
atggattcagttgattacttttgtattttattcattaattttatgcttaatgctttttatgcgcttgccaacgttcataaatcgatcaaggtctcaatta |
624 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16846747 |
atggattcagttgatcacttttgtattttattcgttaattttatacttaatgctttttatgtgcttgccaatgttcataaatcgatcaaggtctcaatta |
16846846 |
T |
|
| Q |
625 |
ttactaaccataactttagtgcttgaactaattataaactcgactaagacattagagagttataacaatttaaaagcattagtgatccaagacactggcc |
724 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
16846847 |
ttactaaccataactttagtgcttgaactatttataaactcgactaaaacattagagagttataacaatttaaaagcattagtgatccaagacattgacc |
16846946 |
T |
|
| Q |
725 |
taacaattttgttcaaatgtcttaaaattgtgtaatcagtccgaactgtattca |
778 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
16846947 |
taacaattttattcaaatgtcttaaaatcgtgtaatcagtccgaactttattca |
16847000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 16846172 - 16846248
Alignment:
| Q |
7 |
acattttagtgagaagcatgtagtgaagaaaccagtagaatcaactactgcctatctcgcatcgcaggctatgagcc |
83 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||||| ||||| ||||| |
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|
| T |
16846172 |
acattttagtgagaagcttgtaatgaagaaaccagtagaatcagctactgcctatcacgcatcgcgggctacgagcc |
16846248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 16846252 - 16846321
Alignment:
| Q |
66 |
catcgcaggctatgagcccca--tcgcaagatatgattaacaggcatgggtttcaattttgtccaactca |
133 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16846252 |
catcgcaagctatgagctccacatcgcaagatatgattaacaggcattggtttcaattttgtccaactca |
16846321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 476 - 558
Target Start/End: Original strand, 3952606 - 3952689
Alignment:
| Q |
476 |
aagaggaacctctctgtaattgtttgattatgtaactttaaactgttctatggattca-gttgattacttttgtattttattca |
558 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| | |||||| ||| | |||||||||||| ||||||||||| |
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| T |
3952606 |
aagaggaacttctctgtaattgttcaattatgtaactttaaattagtctatgaatttatgttgattactttgttattttattca |
3952689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 430 - 575
Target Start/End: Complemental strand, 35948515 - 35948369
Alignment:
| Q |
430 |
tgtttaagaatcatgagtagataattctctccatgttatttcatgcaagaggaacctctctgtaattgtttgattatgtaactttaaactgttctatgga |
529 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| | || |||||||||||| ||||||||| ||| ||||||||||||||| ||||| ||| |
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|
| T |
35948515 |
tgtttaagaatcatgagtagataattctatcgaagtttgatagtgaaagaggaacctccttgtaattgtgcgatcatgtaactttaaactattctacgga |
35948416 |
T |
|
| Q |
530 |
ttcagttgattacttttgtattttattc-attaattttatgcttaat |
575 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||||| ||| |||||| |
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| T |
35948415 |
tttagctgattacttttgtattttattcaattaattgtattcttaat |
35948369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 582
Target Start/End: Complemental strand, 20047113 - 20047007
Alignment:
| Q |
476 |
aagaggaacctctctgtaattgtttgattatgtaactttaaactgttctatggattcagttgattacttttgtattttattcattaattttatgcttaat |
575 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||| | | ||||| |||||||| |||||| ||||||||| || | ||||| |||||| |
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|
| T |
20047113 |
aagaggaacttctctgtaatcgtttgattttgtaactttaaattatcctatgacttcagttgtctactttattattttattggttgagtttatccttaat |
20047014 |
T |
|
| Q |
576 |
gcttttt |
582 |
Q |
| |
|
||||||| |
|
|
| T |
20047013 |
gcttttt |
20047007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 23375442 - 23375385
Alignment:
| Q |
470 |
tcatgcaagaggaacctctctgtaattgtttgattatgtaactttaaactgttctatg |
527 |
Q |
| |
|
||||| ||||||||| || |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23375442 |
tcatgaaagaggaacttccttgtaattgttcgattatgtaactttaaacaattctatg |
23375385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 762
Target Start/End: Complemental strand, 33027306 - 33027255
Alignment:
| Q |
711 |
ccaagacactggcctaacaattttgttcaaatgtcttaaaattgtgtaatca |
762 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||||||||||||| ||||||| |
|
|
| T |
33027306 |
ccaagacattggcctaactactttgatcaaatgtcttaaaattgagtaatca |
33027255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 442 - 610
Target Start/End: Original strand, 1825560 - 1825729
Alignment:
| Q |
442 |
atgagtagataattctctccatgttatttcatgcaagaggaacctctctgtaattgtttgattatgtaactttaaactgttctatgga-ttcagttgatt |
540 |
Q |
| |
|
|||||||| ||||||||| | |||| ||||| ||||||||| || || | ||||||||||||||| || |||||| ||||||| | || |||||||| |
|
|
| T |
1825560 |
atgagtagctaattctctataggttaggtcatgaaagaggaacttccctttgattgtttgattatgttaccttaaacaattctatgaattttagttgatt |
1825659 |
T |
|
| Q |
541 |
acttttgtattttattc-attaattttatgcttaatgctttttatgcgcttgccaacgttcataaatcgat |
610 |
Q |
| |
|
|| || |||||||||| |||||| || | |||||| |||||||||| || | || || ||||||||||| |
|
|
| T |
1825660 |
ac-ttgctattttattcaattaatattgtacttaatattttttatgcggttacgaatgtccataaatcgat |
1825729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 42473625 - 42473584
Alignment:
| Q |
476 |
aagaggaacctctctgtaattgtttgattatgtaactttaaa |
517 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
42473625 |
aagagaaacttctttgtaattgtttgattatgtaactttaaa |
42473584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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