View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711-Insertion-13 (Length: 845)
Name: NF1711-Insertion-13
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-13 |
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Alignment Details
Target: chr6 (Bit Score: 809; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 6 - 842
Target Start/End: Original strand, 33834535 - 33835371
Alignment:
| Q |
6 |
catacctcaggatttctttccatctcacgagcgagtgcgcctattgatccaggatgtaggctcacatcatcatctaaaaacaatacatatttgctgtctt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33834535 |
catacctcaggatttctttccatctcacgagcgagtgcacctattgatccaggatgtaggctcacatcatcatctaaaaacaatacatatttgctgtctt |
33834634 |
T |
|
| Q |
106 |
tatccatggtctccactccaacctgctcaattgccaatactattgtaagactaaaatagttggtacaatgcaacaagaaaagacaaagcaattaatcaac |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33834635 |
tatccatggtctccactccaacctgctcaattgccaatactattgtaagactaaaatagttggtacaatgcaacaagaaaagacaaagcaattaatcaac |
33834734 |
T |
|
| Q |
206 |
aggaatgaaaatacttgcgcatcaagtaacagtaggtccttcatggatatctttgcttaacaagtgaaaaaaccaggtttcatatatagtatggccttaa |
305 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33834735 |
agtaatgaaaatacttgcgcatcaagtaacagtaggtccttcatagatatctttgcttaacaagtgaaaaaaccaggtttcatatatagtatggccttaa |
33834834 |
T |
|
| Q |
306 |
attacatataagcatgaaaaaacttcaattacatataagcatgaaaaaaccaggtttcatgatttgaacatcaatatgaaattaacttcaattacatata |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33834835 |
attacatataagcatgaaaaaacttcaattacatataagcatgaaaaaaccaggtttcatgatttgaacatcggtatgaaattaacttcaattacatata |
33834934 |
T |
|
| Q |
406 |
agcatgaaaaaaccaggtttcatatatagtatggccttaaattgtgtttgaaaataatagcaaaaatatatgcaagaaaaaagtgtaccaattgattgtg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33834935 |
agcatgaaaaaaccaggtttcatatatagtatggccttaaattgtgtttgaaaataatagcaaaaatatatgcaagaaaaaagtgtaccaattgattgtg |
33835034 |
T |
|
| Q |
506 |
aattttttgactacaagttgttgacaaaccagctacaattaccctagcttctacagaaccctgcatatataaaagattattactttatgacaattccaaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33835035 |
aattttttgactacaagttgttgacaaaccagctacaattaccctagcctctacagaaccctgcatatataaaagattattactttatgacaattccaaa |
33835134 |
T |
|
| Q |
606 |
actgaagtagagtgattaaaaggaaatcaagcttcaatatgaatttcacttgcacctcaaattctgatagtaatcttgatacagaatggtaagcaggatc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33835135 |
actgaagtagagtgattaaaaggaaatcaagcttcaatatgaatttcacttgcacctcaaattctgatagtaatcttgatacagaatggtaagcaggatc |
33835234 |
T |
|
| Q |
706 |
ttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgttaactgcataaaaaatcaaacattgttatgttgttttctgatattt |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33835235 |
ttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgttaactgcataaaaaatcaaacattgttatgtttttttctgatattt |
33835334 |
T |
|
| Q |
806 |
ttgctgaagaattcatacaatatttaatgttatagtg |
842 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
33835335 |
ttgctgaagaattcatacaatatttaatgttatagtg |
33835371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 659 - 768
Target Start/End: Complemental strand, 43154459 - 43154350
Alignment:
| Q |
659 |
acctcaaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatg |
758 |
Q |
| |
|
|||||||||||||||| || || ||||| || ||||||||||||||| ||||| |||||||| || |||| |||||||||||| || ||||| ||||||| |
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|
| T |
43154459 |
acctcaaattctgatattagtcgtgatatagcatggtaagcaggatcctctgtgctttctaccacaaaaagaaattctagagggccgccataaagagatg |
43154360 |
T |
|
| Q |
759 |
ttaactgcat |
768 |
Q |
| |
|
||| |||||| |
|
|
| T |
43154359 |
ttatctgcat |
43154350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 43154759 - 43154707
Alignment:
| Q |
491 |
taccaattgattgtgaattttttgactacaagttgttgacaaaccagctacaa |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43154759 |
taccaattgattgtgaattttttgactacaagttgttgacaaaccagctacaa |
43154707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 43155182 - 43155058
Alignment:
| Q |
7 |
atacctcaggatttctttccatctcacgagcgagtgcgcctattgatccaggatgtaggctcacatcatcatctaaaaacaatacatatttgctgtcttt |
106 |
Q |
| |
|
|||||||||| || | ||||||||||||| ||| || || |||||||||||||||| || ||||| ||||| |||||||||||||| || ||||||| |
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| T |
43155182 |
atacctcagggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccaaaaacaatacatactttgtgtcttt |
43155083 |
T |
|
| Q |
107 |
atccatggtctccactccaacctgc |
131 |
Q |
| |
|
| ||| ||||||| ||||||||| |
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|
| T |
43155082 |
gtgcattttctccaccccaacctgc |
43155058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 761
Target Start/End: Complemental strand, 43142481 - 43142379
Alignment:
| Q |
659 |
acctcaaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatg |
758 |
Q |
| |
|
|||||||||||||||| || || ||||| || ||||||||| ||||| ||||| ||||||| || ||||||||||||| ||| || ||||| |||| || |
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|
| T |
43142481 |
acctcaaattctgatattagtcgtgatataggatggtaagccggatcctctgtgctttctaacacgaaaataaattctatagggccgccataaagagttg |
43142382 |
T |
|
| Q |
759 |
tta |
761 |
Q |
| |
|
||| |
|
|
| T |
43142381 |
tta |
43142379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 43143202 - 43143095
Alignment:
| Q |
24 |
tccatctcacgagcgagtgcgcctattgatccaggatgtaggctcacatcatcatctaaaaacaatacatatttgctgtctttatccatggtctccactc |
123 |
Q |
| |
|
||||||||||||| ||| || || |||||||||||||||| || ||||| ||||| ||||||||||||| || ||||||| | ||| ||||||| | |
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|
| T |
43143202 |
tccatctcacgagtgagcgctccgattgatccaggatgtatcctaacatcgtcatccgaaaacaatacatactttgtgtctttgtgcattttctccaccc |
43143103 |
T |
|
| Q |
124 |
caacctgc |
131 |
Q |
| |
|
|||||||| |
|
|
| T |
43143102 |
caacctgc |
43143095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 39916669 - 39916746
Alignment:
| Q |
81 |
aaaaacaatacatatttgctgtctttatccatggtctccactccaacctgctcaattgccaatactattgtaagacta |
158 |
Q |
| |
|
||||||| |||||| ||| ||||||||| ||| | | ||||||||||||||||| ||| |||||| ||||||| |||| |
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|
| T |
39916669 |
aaaaacagtacatacttgttgtctttatgcattgaccccactccaacctgctcagttgacaataccattgtaatacta |
39916746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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