View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711-Insertion-14 (Length: 633)
Name: NF1711-Insertion-14
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 627
Target Start/End: Original strand, 6364608 - 6365235
Alignment:
| Q |
8 |
tctacaaaattgtagtcattgattgtgtcaagtttttggaaaagagaatttttagtctnnnnnnntatttaacaagttatacatacatgttggatataat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
6364608 |
tctacaaaattgtagtcattgattgtgtcaagtttttggaaaagagaatttatagtctaaaaaaatatttaacaagttatac----atgttggatataat |
6364703 |
T |
|
| Q |
108 |
ttataaatattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364704 |
ttataaatattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatg |
6364803 |
T |
|
| Q |
208 |
gtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364804 |
gtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcc |
6364903 |
T |
|
| Q |
308 |
cattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactttgcctttac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |
|
|
| T |
6364904 |
cattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactttgccttttc |
6365003 |
T |
|
| Q |
408 |
cggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365004 |
cggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttaca |
6365103 |
T |
|
| Q |
508 |
gctcaaacgttctttatacctact-------------acatccacttgcccttaattatatcaaattgaaaactaaattttaatattttagtggtaattg |
594 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6365104 |
gctcaaatgttctttatacctactacataatttctcaacatccacttgcccttaattatatcaaattg-aaactaaattttaatattttagtggtaattg |
6365202 |
T |
|
| Q |
595 |
atagtaactggttatttatgaataatatttggg |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6365203 |
atagtaactggttatttatgaataatatttggg |
6365235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 115 - 365
Target Start/End: Original strand, 6353956 - 6354203
Alignment:
| Q |
115 |
tattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttgga |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||| ||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
6353956 |
tattcttaccttgttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaagtggatggatccatggtttgga |
6354055 |
T |
|
| Q |
215 |
acatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaa |
314 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| ||||||||| | |||| || || ||||||||||| ||| ||||||||| | |||||||||||| |
|
|
| T |
6354056 |
acatcttcaagtgtcaaactcacaaggaagaatt---caccttgcataaaattatcgatgtaaaaagctccgggaattcccatgttactgtcccattcaa |
6354152 |
T |
|
| Q |
315 |
attcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
365 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
6354153 |
aatgaatactgaaagcattttgtttgtctcccaatgttggtatggaggtaa |
6354203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 365
Target Start/End: Original strand, 7460966 - 7461213
Alignment:
| Q |
115 |
tattcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttgga |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7460966 |
tattcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgcaaacaaagttgatggttccatggtttgga |
7461065 |
T |
|
| Q |
215 |
acatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaa |
314 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| ||||||||| ||| || ||||||||||||||||||||| |||||||| | ||||||||| || |
|
|
| T |
7461066 |
acatcttcaagtgtcaaactcacaaggaagaatt---caccttgcatatagttatcaatataaaaagctcctggaattcccatggtactgtcccattgaa |
7461162 |
T |
|
| Q |
315 |
attcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
365 |
Q |
| |
|
| | ||||||||||||| ||| || || ||||||||||| | |||||||| |
|
|
| T |
7461163 |
aatgaatactgaaagcagattgcttgtcccccaatgttgggagggaggtaa |
7461213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 120 - 371
Target Start/End: Original strand, 6425506 - 6425754
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
|||||||||| || || || ||||| | | ||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6425506 |
ttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaagagttgcaaacaaagttgatggttccatggtttggaacatc |
6425605 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaattca |
319 |
Q |
| |
|
|||||| ||||| || ||||||||||| | || ||||| | ||||||||||||| || ||||||||| ||||||||||| || |||||||||| | | |
|
|
| T |
6425606 |
ttcaagtgtcaaactcacaaggaagaact---catgttgcaaaaaattctcaatatagaatgctcctggaattcccatgtcactgccccattcaaaatga |
6425702 |
T |
|
| Q |
320 |
atactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacac |
371 |
Q |
| |
|
| |||| |||||||||| || ||||| |||||||| | |||||||||||||| |
|
|
| T |
6425703 |
acactgtaagcattttgcttgtctcctaatgttggtatggaggtaataacac |
6425754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 6290726 - 6290855
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6290726 |
ttaccttgttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaagttgatggttccatggttgggaacatc |
6290825 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattc |
249 |
Q |
| |
|
|||||| ||||| || ||||| |||||||| |
|
|
| T |
6290826 |
ttcaagggtcaaacttacaagaaagaattc |
6290855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 120 - 315
Target Start/End: Original strand, 6333403 - 6333595
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
6333403 |
ttaccttgttcgtaaagaagatgcgtttcgttttatactttttagcattgtaaatccatgagttgcaaacaaagttgatggttccatggatgggaatatc |
6333502 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
315 |
Q |
| |
|
|||||| ||||| || ||||||||||||| | ||| ||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
6333503 |
ttcaagcgtcaaacttacaaggaagaatt---ctcctagcatgaaattttcaatataaaatgctcctggaattcccatctcactgtcccattcaaa |
6333595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 120 - 348
Target Start/End: Original strand, 6392437 - 6392665
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| |||||| ||||| ||||| || |||||| |
|
|
| T |
6392437 |
ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc |
6392536 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattcaaat |
316 |
Q |
| |
|
|||||| ||||| || |||||||||| || || ||||| | |||||| || ||| |||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
6392537 |
ttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattcaaaa |
6392633 |
T |
|
| Q |
317 |
tcaatactgaaagcattttgtttatctcccaa |
348 |
Q |
| |
|
| ||||||||||||||||||| | |||||||| |
|
|
| T |
6392634 |
tgaatactgaaagcattttgtatgtctcccaa |
6392665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 120 - 348
Target Start/End: Original strand, 6411577 - 6411805
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| |||||| ||||| ||||| || |||||| |
|
|
| T |
6411577 |
ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc |
6411676 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattcaaat |
316 |
Q |
| |
|
|||||| ||||| || |||||||||| || || ||||| | |||||| || ||| |||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
6411677 |
ttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattcaaaa |
6411773 |
T |
|
| Q |
317 |
tcaatactgaaagcattttgtttatctcccaa |
348 |
Q |
| |
|
| ||||||||||||||||||| | |||||||| |
|
|
| T |
6411774 |
tgaatactgaaagcattttgtatgtctcccaa |
6411805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 120 - 315
Target Start/End: Original strand, 6275978 - 6276170
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
6275978 |
ttaccttgttggcaaagaaaatgcgttcagttttgtactttcgacaattgtaaatccatgagttgcaaacaaagttgatggttccatggttaggaatatc |
6276077 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
315 |
Q |
| |
|
|||||| || || || ||||| ||||||| | ||| ||| |||||||||||||||| ||||||||| ||||||| ||| | ||||||||||| |
|
|
| T |
6276078 |
ttcaagtgttaaacttacaagaaagaatt---ctcctagcatgaaattctcaatataaaatgctcctggaattcccatctcactatcccattcaaa |
6276170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 6322953 - 6323082
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||| || || | ||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
6322953 |
ttaccttgttggcgaagaagatgcgtttcgttttatacttgtcagcactgtaaatccatgagttgcatacaaagttgatggttccatggtttggaatatc |
6323052 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattc |
249 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |
|
|
| T |
6323053 |
ttcaagtgtcaaacttacaaggaagaattc |
6323082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 6371533 - 6371664
Alignment:
| Q |
120 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
219 |
Q |
| |
|
|||||||||||| |||||| ||||| | || | || |||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6371533 |
ttaccttgttggtaaagaagatgcgctcagagtgatagtttttagcattgtaaatccatgagttgcagttaaagttgatggttccatgatttggaacatc |
6371632 |
T |
|
| Q |
220 |
ttcaagagtcaagctgacaaggaagaattcac |
251 |
Q |
| |
|
| ||| ||||| || |||||||||| ||||| |
|
|
| T |
6371633 |
attaagggtcaaactcacaaggaagagttcac |
6371664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 6265475 - 6265599
Alignment:
| Q |
118 |
tcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaaca |
217 |
Q |
| |
|
|||||| |||||||| |||||||| || | |||| ||| ||||| || ||||||||||| |||||||||||||||| ||||||||| |||||| | | |
|
|
| T |
6265475 |
tcttacattgttggcgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggata |
6265574 |
T |
|
| Q |
218 |
tcttcaagagtcaagctgacaagga |
242 |
Q |
| |
|
|| ||||||||||| || ||||||| |
|
|
| T |
6265575 |
tcatcaagagtcaaactcacaagga |
6265599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 6265663 - 6265711
Alignment:
| Q |
309 |
attcaaattcaatactgaaagcattttgtttatctcccaatgttggcaa |
357 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6265663 |
attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggcaa |
6265711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 42686905 - 42686798
Alignment:
| Q |
121 |
taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct |
220 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
42686905 |
taccttgttggcaaagaaaatgcgtggacttttgtaaagttttgcgttgtaaacccaagagttgcatacaaatcgaatggttccatggtttggaacatct |
42686806 |
T |
|
| Q |
221 |
tcaagagt |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
42686805 |
tcaagagt |
42686798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 42694694 - 42694816
Alignment:
| Q |
121 |
taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct |
220 |
Q |
| |
|
|||||| ||||||||||||||||| | | ||||| | ||| || || |||| ||| |||||||| ||||||| |||| ||||||| ||||||| ||| |
|
|
| T |
42694694 |
taccttattggcaaagaaaatgcggtcaagtttgtggtgtttggcattataaatccaggagttgcatacaaagtagatgcttccatgatttggaatgtct |
42694793 |
T |
|
| Q |
221 |
tcaagagtcaagctgacaaggaa |
243 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
42694794 |
tcaagagtcaaactcacaaggaa |
42694816 |
T |
|
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