View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-5 (Length: 513)
Name: NF1711-Insertion-5
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-5 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 37782844 - 37783355
Alignment:
| Q |
8 |
cagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagact |
107 |
Q |
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| T |
37782844 |
cagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagact |
37782943 |
T |
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| Q |
108 |
tcttactattgcttattcggtatgctcgtagaaactcaatcaatcaaaccacttcaagttttttatttgagataggtagattcaaatatgaacaaaaatt |
207 |
Q |
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| T |
37782944 |
tcttactattgcttattcggtatgctcgtagaaactcaatcaatcaaaccaattcaagttttttatttgagataggtagattcaaatatgaacaaaaatt |
37783043 |
T |
|
| Q |
208 |
tgagaaatatatattggacaatgcattttctaattatttacaacatagagac-nnnnnnnntctactttagactgggacacaagtaaatttagtggaatt |
306 |
Q |
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| T |
37783044 |
tgagaaatatatattggacaatgctttttctaattttttacaacatagagacaaaaaaaaatctactttagactgggacacacgtaaatttagtggaatt |
37783143 |
T |
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| Q |
307 |
tacaagaattttactcccttcatat-----atatatgtgttaaattaaaggttcgaatgtagttgttaaatgcaagtgaatgttactgcagggaattgta |
401 |
Q |
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| T |
37783144 |
tacaagaattttactcccttcatatatatcatatatgtgttatattaaaggttcgaatgtagttgttaaatgcaagtgaatgttattgcagggaattgta |
37783243 |
T |
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| Q |
402 |
gcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgcta |
501 |
Q |
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| T |
37783244 |
gcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgcta |
37783343 |
T |
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| Q |
502 |
tctctgcctata |
513 |
Q |
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|||||||||||| |
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| T |
37783344 |
tctctgcctata |
37783355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 37808221 - 37808350
Alignment:
| Q |
8 |
cagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagact |
107 |
Q |
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|||||||| ||||| |||||| ||| |||||||||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||||||||||| || |
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| T |
37808221 |
cagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcgatagggattggaccgaatggaagctgggttacgatatcaggct |
37808320 |
T |
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| Q |
108 |
tcttactattgcttattcggtatgctcgta |
137 |
Q |
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| T |
37808321 |
tctcactatggcttattcggtatgctcgta |
37808350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 362 - 512
Target Start/End: Original strand, 37808448 - 37808598
Alignment:
| Q |
362 |
agttgttaaatgcaagtgaatgttactgcagggaattgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatattt |
461 |
Q |
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| T |
37808448 |
agttgttaaatgtatgtgaatgttaatgcagggtattgtggtctctgggtcagtggttattgttatttcttggtgtataaggatgaggggtcctctattt |
37808547 |
T |
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| Q |
462 |
acatctgctttcaatcctcttcagctcttacttgttgctatctctgcctat |
512 |
Q |
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|||| |||||||||||||||||| |||||||| ||| ||| ||||||| |
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| T |
37808548 |
gtgtctgttttcaatcctcttcagcttttacttgtagctgtctttgcctat |
37808598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 37792208 - 37792320
Alignment:
| Q |
22 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
121 |
Q |
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||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
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| T |
37792208 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37792307 |
T |
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| Q |
122 |
attcggtatgctc |
134 |
Q |
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| T |
37792308 |
attcggtatgctc |
37792320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 37801900 - 37802012
Alignment:
| Q |
22 |
acaatggcagcgattcaagccattgtttttgctctttgtatcgatagagattggaatcaatggaagctcggttacgatatcagacttcttactattgctt |
121 |
Q |
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||||||| ||| ||||||||||| ||||||||| ||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| | | |||| |
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| T |
37801900 |
acaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagctt |
37801999 |
T |
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| Q |
122 |
attcggtatgctc |
134 |
Q |
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| T |
37802000 |
attcggtatgctc |
37802012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 508
Target Start/End: Original strand, 37803798 - 37803885
Alignment:
| Q |
421 |
ttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgctatctctgc |
508 |
Q |
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| T |
37803798 |
ttgttattgcttggtgcataaagatgagaggccctctctttgcctctgttttctatcctcttcaacttttacttgtggctgtctctgc |
37803885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 496
Target Start/End: Original strand, 37792398 - 37792503
Alignment:
| Q |
391 |
agggaattgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctctt |
490 |
Q |
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|||||||||||||||||||| || | | |||||||| | |||||||||||||||||||| ||| | ||| | |||| |||| |||||||||| ||| | |
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| T |
37792398 |
agggaattgtagcctctggaataactactattgttattgcctggtgcataaagatgagaggccctctttttgcctctgttttctatcctcttcaactcct |
37792497 |
T |
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| Q |
491 |
acttgt |
496 |
Q |
| |
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|||||| |
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| T |
37792498 |
acttgt |
37792503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 1214066 - 1213982
Alignment:
| Q |
397 |
ttgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctct |
481 |
Q |
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| T |
1214066 |
ttgttgcctctggattagtggttattgtgacttcgtggtgcataaagatgaggggacctttatttgcatctgtcttcaaccctct |
1213982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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