View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-6 (Length: 404)
Name: NF1711-Insertion-6
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 239 - 400
Target Start/End: Complemental strand, 7369398 - 7369237
Alignment:
| Q |
239 |
gagcatacgtatacgagaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacataagacgtat |
338 |
Q |
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| T |
7369398 |
gagcatacgtatacgggaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacctaagacgtgt |
7369299 |
T |
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| Q |
339 |
ctatcaatcatgtcccagcatgggttcctcctcctgcrggttgcctaaagtgctacattgac |
400 |
Q |
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| T |
7369298 |
ctatcaatcatgtcccagcatgggttcctcctcctgcaggttacctaaagtgctacattgac |
7369237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 7369656 - 7369554
Alignment:
| Q |
7 |
actttagtgtcaagtttgtaaggagacattccttaacaatggtaaaaacagcttctagtttccatctttttattgatatcaccacttgtaagttttctct |
106 |
Q |
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| T |
7369656 |
actttagtgtcaagtttgtaaggagacattccttaacaatggtaaaaacagcttctagtttccatctttttattgatatcaccacttataagttttccct |
7369557 |
T |
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| Q |
107 |
tgt |
109 |
Q |
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||| |
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| T |
7369556 |
tgt |
7369554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 7369486 - 7369410
Alignment:
| Q |
179 |
tgttatgttagttcatcttattattttgctatgaatttatgtagtatatggaagcattatgagcatacgtatacgag |
255 |
Q |
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| T |
7369486 |
tgttatgttagttcatcttattattttgctatgaatttatgtagtatatggaagcattatgagcatacgtatacgag |
7369410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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