View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-7 (Length: 592)
Name: NF1711-Insertion-7
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 592
Target Start/End: Complemental strand, 36920255 - 36919671
Alignment:
| Q |
8 |
ccaaagtcacaatatccttttctgaggcacacttgatctcattctccgcaatccaatgggctacattgcgaactaagtcatgcattttgacacattttcc |
107 |
Q |
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| T |
36920255 |
ccaaagtcataatatccttttctgaggcacacttgatctcattctccgcaatccaatgggctacattgcgaactaagtcatgcattttgacacattttcc |
36920156 |
T |
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| Q |
108 |
ttcatcaacatctagcaacaaacaagaacttatgagcttatttttagccacagttacttcgttccttgccccttcatatgagcgaacttctccaactatg |
207 |
Q |
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| T |
36920155 |
ttcattaacatctagcaacaaacaagaacttatgagcttatttttagccacagttacttcgttccttgccccttcatatgagtgaacttctccaactatg |
36920056 |
T |
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| Q |
208 |
ccaagccctattgcagacctagttaaaaactccacaggaatttcacaatcttcaggaaatacagaacacaacaagaaaagtgacttggcctcttcagtgt |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920055 |
ccaagcccgattgcagacctagttaaaaactccacaggaatttcacaatcttcaggaaatacagaacacaacaagaaaagtgacttggcctcttcagtgt |
36919956 |
T |
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| Q |
308 |
ccaaattatcatagcttagttgcaagcacttgtacgggttttgcaaacctttttcaatattaacaggttttgaacttctcaatctatccaatgccacctt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919955 |
ccaaattatcatagcttagttgcaagcacttgtacgggttttgcaaacctttttcaatattaacaggttttgaacttctcaatctatccaatgccacctt |
36919856 |
T |
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| Q |
408 |
ccattccacctcagccttgcctttcaaactgctagccactgctacagtggcgacaggcaagcctttacattcatttgaaatttctctagccatattcttt |
507 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919855 |
ccattccacctcagccttgcctttcaagctgctagccactgctacagtggcgacaggcaagcctttacattcatttgaaatttctctagccatattcttt |
36919756 |
T |
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| Q |
508 |
atagtaatccaagttccttcagatatgagtgcttgcttctggaaaagatcccacgtttcatcgttggttagtgttgataactgaa |
592 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919755 |
atagaaatccaagttccttcagatatcagtgcttgcttttggaaaagatcccacgtttcatcgttggttagtgttgataactgaa |
36919671 |
T |
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