View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711-Insertion-8 (Length: 916)
Name: NF1711-Insertion-8
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 741; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 7 - 863
Target Start/End: Complemental strand, 2618645 - 2617795
Alignment:
| Q |
7 |
aatggtttcgtttcttcagctagtcttagttggtaataaccagactatgcatctaaggaagaaaaccaattacatccttttattttttctaaaataaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618645 |
aatggtttcgtttcttcagctagtcttagttggtaataaccagactttgcatctaaggaagaaaaccaattacatccttttattttttctaaaataaaat |
2618546 |
T |
|
| Q |
107 |
cttttcttggtaacttataagaatctccgacagttgctaggttaagcttcttataattgattactattctcctcttacccctctttatctcgttgtgatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618545 |
cttttcttggtaacttataagaatctccgacagttgctaggttaagcttcttataattgattaccattctcctcttacccctctttatctcgttgtgatt |
2618446 |
T |
|
| Q |
207 |
ttcaacataaaaagctggtgcagagtgtgggcttgatgatggtctaataagatccttatcaagtaaatctttacattcttgttgaagttcttcaacatct |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2618445 |
ttcaacataaaaagctggtg-agagtgtgggcttgatgatggt-----aagattcttatcaagtaaatctttacattcttgttgaaattcttcaacatct |
2618352 |
T |
|
| Q |
307 |
ctaatagaatatggaattctatttggaacatttatttcgtcatcagggtttttaagtttaataactagtaattcatgattagtgttcttaagactgtcta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618351 |
ctaatagaatatggaattctatttggaacatttatttcgtcatcagggtttttaagtttaataactagtaattcatgattagtgttcttaagactgtcta |
2618252 |
T |
|
| Q |
407 |
gagagttatatgaacaaacttcatctaatctttcttctatgctaataagaaaatttctttcttcccatatggttcttaattccttaaagtttcccttaat |
506 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2618251 |
gagggttatatgaacaaacttcatctaatctttcttctatgctaatatgaaaatttctttcttcccatatggttcttaattccttaaggtttcccttaat |
2618152 |
T |
|
| Q |
507 |
aagatttaaaatttcgtttctagtaactattttggttgttactattttactattcttagggtttcccaagtctttccaacgaagtgatataatatctctt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
2618151 |
aagatttaaaatttcgtttctagtaactattttggttgttactattttactattattagggtttcctaagtctttccaacaaagtgatatagtatctctt |
2618052 |
T |
|
| Q |
607 |
ctttgagtaaatggttcgtataactttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaaaaacttatacc |
706 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618051 |
ctttgagtaaatggttcgtatagctttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaaaaacttatacc |
2617952 |
T |
|
| Q |
707 |
attcaatttctagagaaacatctatgaggttaaaccatatctgatgtttcgacttgtctacaactataatttccttcggttttgttaatatttcccaatt |
806 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2617951 |
cttcaatttctatagaaacatatatgaggttaaaccatatctgatgtttcgacttgtctacaactataatatccttcaattttgttaatatttcccaatt |
2617852 |
T |
|
| Q |
807 |
tttagagatagattttttacaaaamcaaaargtkgcacctgtatctatattgsccag |
863 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||||| | |||| |
|
|
| T |
2617851 |
tttagagatagattttttacaaaaacaaagagttgcacctgtatctatataggccag |
2617795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 7 - 863
Target Start/End: Complemental strand, 41614831 - 41613974
Alignment:
| Q |
7 |
aatggtttcgtttcttcagctagtcttagttggtaataaccagactatgcatctaaggaagaaaaccaattacatccttttattttttctaaaataaaat |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41614831 |
aatggttttgtttcttcagctagtcttagttggtaataaccagactttgcatctaaggaagaaaaccaattacacccttttattttttctaaaataaaat |
41614732 |
T |
|
| Q |
107 |
cttttcttggtaacttataagaatctccgacagttgctaggttaagcttcttataattgattactattctcctcttacccctctttatctcgttgtgatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
41614731 |
cttttcttggtaacttataagaatctccgacagttgctaggttaagcttcttatacttgattaccattctcctcttacccctctttatctcattgtgatt |
41614632 |
T |
|
| Q |
207 |
ttcaacataaaaagctggtgcagagtgtggg-cttgatgatggtctaataagatccttatcaagtaaatctttacattcttgttgaagttcttcaacatc |
305 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41614631 |
ttcaacataaaaagctggtgtagagtgtggggcttgatgatggtctaataagatccttatcaagtaaatctttacattcttgttgaaattcttcaacatc |
41614532 |
T |
|
| Q |
306 |
tctaatagaatatggaattctatttggaacatttatttcgtcatcagggtttttaagtttaataactagtaattcatgattagtgttcttaagactgtct |
405 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41614531 |
tctaatagaatatggaattctattcggaacatttatttcgtcattagggtttttaagtttaataactattaattcatgattagtgttcttaagactgtct |
41614432 |
T |
|
| Q |
406 |
agagagttatatgaacaaacttcatctaatctttcttctatgctaataagaaaatttctttcttcccatatggttcttaattccttaaagtttcccttaa |
505 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
41614431 |
agaggattatctgaacatacttcatctaatctttcttctatactaatatgaaaatttctttcttcccatatagttcttagttccttaaggtttcccttaa |
41614332 |
T |
|
| Q |
506 |
taagatttaaaatttcgtttctagtaactattttggttgttactattttactattcttagggtttcccaagtctttccaacgaagtgatataatatctct |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
41614331 |
taagatttaaaatttcgtttctagtaactattttggttgttattattttacaattcttagggtttcataagtctttccaacgaagtgatatagtatctct |
41614232 |
T |
|
| Q |
606 |
tctttgagtaaatggttcgtataactttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaaaaacttatac |
705 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
41614231 |
tctttgagtaaatggttcatatagctttaaaaaattatttcatataactaggtctagtcctgaatcatggaggtaaattgttggaataaaaaatttatgc |
41614132 |
T |
|
| Q |
706 |
cattcaatttctagagaaacatctatgaggttaaaccatatctgatgtttcgacttgtctacaactataatttccttcggttttgttaatatttcccaat |
805 |
Q |
| |
|
| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
41614131 |
cctttaatttctatagaaacatctctgaggttaaaccatatctgatgtttcgacttgtctgcaactataatttcttttggttttgttaatctttcccaat |
41614032 |
T |
|
| Q |
806 |
ttttagagatagattttttacaaaamcaaaargtkgcacctgtatctatattgsccag |
863 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || |||||||||||||||| | |||| |
|
|
| T |
41614031 |
ttttagagatagattttttaccaaaacaaagagttgcacctgtatctatataggccag |
41613974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 396 - 852
Target Start/End: Complemental strand, 56467430 - 56466974
Alignment:
| Q |
396 |
aagactgtctagagagttatatgaacaaacttcatctaatctttcttctatgctaataagaaaatttctttcttcccatatggttcttaattccttaaag |
495 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
56467430 |
aagactgtctagagggttatctgaacagacttcgtataatctttcttctatgctaatatgaaaatttctttcttcccatatagttcttaattccttaagg |
56467331 |
T |
|
| Q |
496 |
tttcccttaataagatttaaaatttcgtttctagtaactattttggttgttactattttactattcttagggtttcccaagtctttccaacgaagtgata |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
56467330 |
tttcccttaataagatttaaaatttcgtttctagtaactattttggttgttattattttacaattcttaaggtttccaaagtctttccaacgaagtgata |
56467231 |
T |
|
| Q |
596 |
taatatctcttctttgagtaaatggttcgtataactttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaa |
695 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56467230 |
tagtatctcttctttgagtaaatggttcatatagctttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaa |
56467131 |
T |
|
| Q |
696 |
aaacttataccattcaatttctagagaaacatctatgaggttaaaccatatctgatgtttcgacttgtctacaactataatttccttcggttttgttaat |
795 |
Q |
| |
|
||| || |||| ||||||||||| ||||| |||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
56467130 |
aaatttctacctttcaatttctatagaaaaatctctgagggtaaaccatatttgatgtttcgacttgtctgcaactataatttcctttggttttgttaat |
56467031 |
T |
|
| Q |
796 |
atttcccaatttttagagatagattttttacaaaamcaaaargtkgcacctgtatct |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| || |||||||||||| |
|
|
| T |
56467030 |
ctttcccaatttttagagatagattttttaccaaaacaaagagttgcacctgtatct |
56466974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 514
Target Start/End: Original strand, 22428427 - 22428933
Alignment:
| Q |
7 |
aatggtttcgtttcttcagctagtcttagttggtaataaccagactatgcatctaaggaagaaaaccaattacatccttttattttttctaaaataaaat |
106 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||||||||| | |
|
|
| T |
22428427 |
aatggttttgtttcttcagctagtctgagttggtaataaccagactttgcatccaaagaagaaaaccaattacatcattttatttt-tctaaaataaagt |
22428525 |
T |
|
| Q |
107 |
cttttcttggtaacttataagaatctccgacagttgctaggttaagcttcttataattgattactattctcctcttacccctctttatctcgttgtgatt |
206 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| | ||||| |||||||| || ||||||| ||||||||| |
|
|
| T |
22428526 |
cttttcttggtaacttataggaatctccaattgttgctaggttaagcttcttatagttgatcatcattcttctcttacctctttttatcttgttgtgatt |
22428625 |
T |
|
| Q |
207 |
ttcaacataaaaagctggtgcagagtgtgggcttgatgatggtctaataagatccttatcaagtaaatctttacattcttgttgaagttcttcaacatct |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| || ||| |||||||||||| ||||||||||||| |
|
|
| T |
22428626 |
ttcaacataaaaagttggtgcagagtgtgaaattgatgaaggtataataagatccttatcaagtaagtcattatattcttgttgaaattcttcaacatct |
22428725 |
T |
|
| Q |
307 |
ctaatagaatatggaattctatttggaacatttatttcgtcatcagggtttttaagtttaataactagtaattcatgattagtgttcttaagactgtcta |
406 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
22428726 |
ctaatagaatatgaaattctatttggaacatttatttcgtcgttagggtttttaagtttaataactattaattcatgatcagtgttcttaaggctgtcta |
22428825 |
T |
|
| Q |
407 |
gagagttatatgaacaaacttcatctaatctttcttctatgctaataagaaaatttctttcttcccatatggttcttaattccttaaagtttcccttaat |
506 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
22428826 |
gtgggttatctgaacaaacttcatctaatctttcttctatgctaatatggaaatttctttcttcccatataattcttaattccttagggtttcccttaat |
22428925 |
T |
|
| Q |
507 |
aagattta |
514 |
Q |
| |
|
|||||||| |
|
|
| T |
22428926 |
aagattta |
22428933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 506 - 856
Target Start/End: Original strand, 22429250 - 22429600
Alignment:
| Q |
506 |
taagatttaaaatttcgtttctagtaactattttggttgttactattttactattcttagggtttcccaagtctttccaacgaagtgatataatatctct |
605 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
22429250 |
taagatttaaaatctcatttctagtaactattttggtggttactattctactattcttagggtttcttaagtttttccaatgaagtgatattgtatctct |
22429349 |
T |
|
| Q |
606 |
tctttgagtaaatggttcgtataactttaaaaaattatttcctataattaagtctagtcctgaatcatggaggtaaattgttggaataaaaaacttatac |
705 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22429350 |
tctttgggtaaatggttcatataattttaaaaagttatttcctatgattaagtctagtcctgaatcatgatggtaaattgttggaataaaaaacatatac |
22429449 |
T |
|
| Q |
706 |
cattcaatttctagagaaacatctatgaggttaaaccatatctgatgtttcgacttgtctacaactataatttccttcggttttgttaatatttcccaat |
805 |
Q |
| |
|
| ||||||||||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
22429450 |
ccttcaatttctatagaaacatctctaaggttaaaccatatatgatgtttcgacttgtctacaactataatttcctttggttttgctaatcttttccaat |
22429549 |
T |
|
| Q |
806 |
ttttagagatagattttttacaaaamcaaaargtkgcacctgtatctatat |
856 |
Q |
| |
|
|| |||| ||| ||| ||||| ||| |||| || | |||||||||||||| |
|
|
| T |
22429550 |
ttctagatataaattctttaccaaaacaaagagttgtacctgtatctatat |
22429600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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