View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711-Insertion-9 (Length: 477)
Name: NF1711-Insertion-9
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 2872039 - 2872495
Alignment:
| Q |
7 |
aaagtttttgttgaagctaaaggaaagaattgataggtaggtagtattgatgcattgctcttaaaaccgagacaaaatcagaatcaaatcgttcaaacga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2872039 |
aaagtttttgttgaagctaaaggaaagaattgataggtaggtagtattgatgcattgctcttaaaaccgagacaaaatcacaatcaaatcgttcaaacga |
2872138 |
T |
|
| Q |
107 |
tatatagtgtcggttcacaattacacaaattgaactgtgttgctcgnnnnnnnn-aaacattgatcataattttctcactttcaacatttcttttcttcc |
205 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2872139 |
tatatagtgtcggttcacaattacacgaattgaaccgtgttgctcgtttttttttaaacattgatcataattttctcactttcaacatttcttttcttcc |
2872238 |
T |
|
| Q |
206 |
tatcttttgctcccttacatgaggacatcattttcaattactcaataatctcatatcacttttatggnnnnnnnnnn-gtcatgtgtctgttaatacata |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
2872239 |
tatcttttgctcccttacatgaggacatcattttcaattactcaataatctcatatcacttttatgggttttttatttgtcatgtgtttgttaatacata |
2872338 |
T |
|
| Q |
305 |
tatttttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtgggaagtagagcattac |
404 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2872339 |
tatttttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtgggaagtagagcattac |
2872438 |
T |
|
| Q |
405 |
ctagtttcacaaactttacaattggtgcagtggaggtaaatttcagcacaatctagc |
461 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2872439 |
ctagtttcacaaactttactattggtgcagtggaggtaaatttcagcacaatctagc |
2872495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 2882561 - 2882642
Alignment:
| Q |
310 |
ttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtggga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | | ||||||||||| | |||||||||| |||| ||||||| |
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|
| T |
2882561 |
ttcttttagagttgggattgagattccagcaattgaagttagatatgagcacctaaatgttgaggcagaagcttttgtggga |
2882642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 2882329 - 2882367
Alignment:
| Q |
7 |
aaagtttttgttgaagctaaaggaaagaattgataggta |
45 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2882329 |
aaagtttttgttgaagctcaaggaaagaattgataggta |
2882367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 2902743 - 2902706
Alignment:
| Q |
8 |
aagtttttgttgaagctaaaggaaagaattgataggta |
45 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2902743 |
aagtttttgttgaagcttaaggaaagaattgataggta |
2902706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 2902452 - 2902413
Alignment:
| Q |
310 |
ttcttttagagttgggattgagattccaacaattgaagtt |
349 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
2902452 |
ttcttttagagttggtattgagattccaacaatagaagtt |
2902413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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