View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_1 (Length: 740)

Name: NF1711_high_1
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_1
NF1711_high_1
[»] chr4 (13 HSPs)
chr4 (18-728)||(3254051-3254758)
chr4 (535-648)||(28497486-28497600)
chr4 (548-642)||(35555831-35555927)
chr4 (444-630)||(47611741-47611929)
chr4 (542-648)||(54470203-54470311)
chr4 (560-640)||(29398822-29398903)
chr4 (546-648)||(17900476-17900580)
chr4 (567-638)||(42639224-42639296)
chr4 (567-648)||(51252665-51252747)
chr4 (586-642)||(31459032-31459089)
chr4 (560-648)||(41192832-41192921)
chr4 (586-642)||(55768724-55768781)
chr4 (586-642)||(55832980-55833037)
[»] chr1 (13 HSPs)
chr1 (529-648)||(2544595-2544716)
chr1 (535-675)||(35828721-35828863)
chr1 (574-648)||(27848016-27848091)
chr1 (559-648)||(43423715-43423805)
chr1 (535-641)||(36339974-36340082)
chr1 (559-642)||(48431602-48431686)
chr1 (528-606)||(10569231-10569310)
chr1 (559-673)||(19908235-19908350)
chr1 (567-648)||(1661426-1661508)
chr1 (595-648)||(52561843-52561897)
chr1 (567-647)||(8343062-8343143)
chr1 (575-679)||(9509283-9509388)
chr1 (574-642)||(32404737-32404806)
[»] chr2 (13 HSPs)
chr2 (535-648)||(43752118-43752233)
chr2 (574-631)||(9578914-9578972)
chr2 (542-642)||(23714439-23714541)
chr2 (542-642)||(24102111-24102213)
chr2 (535-606)||(3481180-3481252)
chr2 (593-648)||(18958903-18958959)
chr2 (575-642)||(45367837-45367905)
chr2 (568-642)||(8180782-8180857)
chr2 (527-648)||(12141540-12141663)
chr2 (568-642)||(25834683-25834758)
chr2 (542-608)||(42543272-42543339)
chr2 (619-675)||(11017285-11017339)
chr2 (586-642)||(19024182-19024239)
[»] chr6 (5 HSPs)
chr6 (535-648)||(14389339-14389453)
chr6 (453-648)||(9593797-9593992)
chr6 (574-642)||(608159-608228)
chr6 (165-242)||(12645266-12645343)
chr6 (574-674)||(33084028-33084129)
[»] chr5 (13 HSPs)
chr5 (536-648)||(79509-79623)
chr5 (564-648)||(33667212-33667297)
chr5 (575-652)||(31636132-31636210)
chr5 (563-679)||(6888958-6889075)
chr5 (593-648)||(14667759-14667815)
chr5 (594-642)||(27895-27944)
chr5 (559-679)||(6859346-6859467)
chr5 (567-675)||(14749276-14749385)
chr5 (546-632)||(42199298-42199386)
chr5 (183-230)||(24872946-24872993)
chr5 (608-674)||(37124539-37124603)
chr5 (528-648)||(2712940-2713062)
chr5 (574-642)||(28676597-28676666)
[»] chr3 (10 HSPs)
chr3 (585-675)||(54365199-54365287)
chr3 (543-648)||(36820140-36820247)
chr3 (571-648)||(50960841-50960919)
chr3 (585-648)||(26490311-26490375)
chr3 (535-640)||(42510187-42510292)
chr3 (589-648)||(44134056-44134116)
chr3 (585-652)||(27917562-27917630)
chr3 (453-675)||(39600770-39600994)
chr3 (575-642)||(49503766-49503834)
chr3 (585-647)||(54128375-54128438)
[»] chr8 (12 HSPs)
chr8 (535-642)||(36143367-36143476)
chr8 (593-673)||(45512725-45512808)
chr8 (567-675)||(44681243-44681352)
chr8 (527-641)||(43904828-43904947)
chr8 (543-675)||(44373745-44373879)
chr8 (585-642)||(18752098-18752155)
chr8 (594-679)||(33511325-33511407)
chr8 (585-648)||(41444548-41444612)
chr8 (593-675)||(13171879-13171962)
chr8 (576-630)||(41971991-41972046)
chr8 (585-642)||(45419239-45419297)
chr8 (535-679)||(10824335-10824477)
[»] chr7 (9 HSPs)
chr7 (542-648)||(48736077-48736185)
chr7 (546-648)||(36514389-36514493)
chr7 (562-642)||(36101964-36102045)
chr7 (585-648)||(7189448-7189512)
chr7 (559-642)||(42187472-42187556)
chr7 (585-642)||(26742118-26742176)
chr7 (585-642)||(40169651-40169709)
chr7 (587-648)||(47848670-47848732)
chr7 (562-607)||(16013326-16013371)
[»] scaffold0018 (1 HSPs)
scaffold0018 (574-648)||(44079-44154)


Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 728
Target Start/End: Complemental strand, 3254758 - 3254051
Alignment:
Q  18 gatagtaccaaaaagaaaagttgcatgaccctgcgcgccatgagaaattaaaccagatttgagataattttttgcatgaattatggtggaccaagtggtg 117  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| |||||||||    
T  3254758 gatagtaccaaaaagaagagttacatgaccctgcgcgccatgagaaa-----ccagatttgagataattttttgcatgaattatggtggatcaagtggtg 3254664  T
Q  118 gagttactaggccaagtagtagcatacagaagacatgcgccatcatcatacttatcggagaggagatcaacccataatttattagaatattgaaacatat 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  3254663 gagttactaggccgagtagtagcatacagaagacatgcgccatcatcatacttatcggagaggagatcaacccataatttattagaagattggaacatat 3254564  T
Q  218 cccaaactagcttctcaaggagacatgtgttggtttctt-----------attcctaggccaccttcatatatatacttgggtctaacaaatatttttaa 306  Q
    ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||      ||||||||||||||||||||||||    
T  3254563 cccaaactagcttctcaaggagacatgtgttggtttctctggctgttctgattcctaggccaccttcata------cttgggtctaacaaatatttttaa 3254470  T
Q  307 gaaaggaaaactaaagagtgttggaaaaaataggaaagagaaattacaaaataacaacaacaaacaaccaaataattttctactaaatagcaatgactat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  3254469 gaaaggaaaactaaagagtgttggaaaaaataggaaagagaaattacaaaataacaacaacaaacaaccaaataattttcgactaaatagcaatgactac 3254370  T
Q  407 atgaatcaaacaacgtcacagtattctataataacttatattttggtccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttcta 506  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||    
T  3254369 atgaatcaaacaacgttacagtattctataataacttatattttggtccaactcactaatctcttagtgattcctaatagtttctcttaaaatttttcta 3254270  T
Q  507 gttcttcatctatcttgaagaatttgattatccttcatttgatctaccctcctactacataatccataggtcttcacactacatgtccaaaccacctaag 606  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  3254269 gttcttcatctatcttgaagaatctgattatccttcatttgatctaccctcctactacataattcataggtcttcacactatatgtccaaaccacctaag 3254170  T
Q  607 ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatatgatctcatatattcttacgacaaaaga 706  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||    
T  3254169 ctattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcat---atctcatacattcttacgacaaaaga 3254073  T
Q  707 acctaacattctcgtctctgct 728  Q
    ||||||||||||||||||||||    
T  3254072 acctaacattctcgtctctgct 3254051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 648
Target Start/End: Complemental strand, 28497600 - 28497486
Alignment:
Q  535 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 633  Q
    |||||| ||| |||||||| ||||| ||||||||||| | | |||||| | ||||||| ||||||||||||||   |||||||  |||||||||||||||    
T  28497600 tatcctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcctttttccacaatcttttctactaaa 28497501  T
Q  634 ggtgctaccacaact 648  Q
    ||||||||| |||||    
T  28497500 ggtgctaccccaact 28497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 642
Target Start/End: Original strand, 35555831 - 35555927
Alignment:
Q  548 atctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||| |||||| ||||| |||||| |||||||| | ||| ||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||    
T  35555831 atctactctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 35555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 630
Target Start/End: Complemental strand, 47611929 - 47611741
Alignment:
Q  444 atattttggtccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttca 543  Q
    |||||||||||||||||| ||  ||| ||||  ||||||||||||||  ||| ||  ||||||| ||||| |||  ||  |||  | ||| | |||| ||    
T  47611929 atattttggtccaactcattagtctcctagtctttcctaatagtttcaattataatttttctaggtcttcctctgcctctaagggtctgactctcctcca 47611830  T
Q  544 tttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctact 630  Q
    | |||| ||| ||||| | |||| ||||  ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  47611829 tctgatttactctccttattacaaaatctctaggtcttctctctacatgcccaaaccacctaagcctattttccatcatcttttctact 47611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 648
Target Start/End: Complemental strand, 54470311 - 54470203
Alignment:
Q  542 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 639  Q
    |||||||| ||| ||||| ||||||||||  | | |||||| | ||||||| ||||||||| ||||| || |||||| |||||||||||||| |||||||    
T  54470311 catttgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgct 54470212  T
Q  640 accacaact 648  Q
    ||| |||||    
T  54470211 accccaact 54470203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 640
Target Start/End: Complemental strand, 29398903 - 29398822
Alignment:
Q  560 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 640  Q
    |||||| |||| |||||||||| | ||||||| ||||||||| ||||  ||||||||| |||||||||||| | ||||||||    
T  29398903 actacagaatctataggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttctaccataggtgcta 29398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 648
Target Start/End: Complemental strand, 17900580 - 17900476
Alignment:
Q  546 tgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 643  Q
    |||||||| |||||| |||||||||||| |||||||| | |||| || ||||||||| | ||| || |||| | | |||||||||||| ||||||||||     
T  17900580 tgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccc 17900481  T
Q  644 caact 648  Q
    |||||    
T  17900480 caact 17900476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 42639224 - 42639296
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgc 638  Q
    |||||||| |||||| | ||||||||||||||||||||||  |  |||||| |||||||||||||| ||||||    
T  42639224 aatccataagtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgc 42639296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 648
Target Start/End: Original strand, 51252665 - 51252747
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||| | |||||| | ||||||| ||| ||||||||||  || |||||| |||||||||||||| |||||||||| |||||    
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaact 51252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 642
Target Start/End: Complemental strand, 31459089 - 31459032
Alignment:
Q  586 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  31459089 tacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 31459032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 648
Target Start/End: Complemental strand, 41192921 - 41192832
Alignment:
Q  560 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||| |||| | |||||||| | |||||||  |||| ||||||||| || |||||| |||||||||||||  |||||||||| |||||    
T  41192921 actacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaact 41192832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 642
Target Start/End: Original strand, 55768724 - 55768781
Alignment:
Q  586 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55768724 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55768781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 642
Target Start/End: Original strand, 55832980 - 55833037
Alignment:
Q  586 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55832980 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 529 - 648
Target Start/End: Complemental strand, 2544716 - 2544595
Alignment:
Q  529 tttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttc 626  Q
    ||||| |||||| ||| |||||||| ||||| |||| | |||| |||||||||| | ||||||||||||||||||||||| | ||||||| |||||||||    
T  2544716 tttgactatcctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttc 2544617  T
Q  627 tactaaaggtgctaccacaact 648  Q
    ||||| |||||||||| |||||    
T  2544616 tactataggtgctaccccaact 2544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 535 - 675
Target Start/End: Original strand, 35828721 - 35828863
Alignment:
Q  535 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa-gttattttccatcatcttttctactaa 632  Q
    |||||| ||| |||||| | ||||| ||||||||||| |||||||||| | ||||| |||||||||||||||   ||||||||| |||||||||||| |     
T  35828721 tatcctccatatgatcttctctccttactacataatctataggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccat 35828820  T
Q  633 aggtgctaccacaactttcttattaatattttcatttctaatc 675  Q
    |||||||||   |||| |||   ||||||| ||||||||||||    
T  35828821 aggtgctactcaaactctctctctaatattgtcatttctaatc 35828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 648
Target Start/End: Original strand, 27848016 - 27848091
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||||| | || |||| |||||||||||||| |||||||| | |||||||||||| | ||||||||||||||||    
T  27848016 aggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaact 27848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 648
Target Start/End: Complemental strand, 43423805 - 43423715
Alignment:
Q  559 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||||||||| | | |||||| | ||||||| ||||||||||||||  || |||||| |||||||||||||| ||||| |||| |||||    
T  43423805 tactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaact 43423715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 641
Target Start/End: Original strand, 36339974 - 36340082
Alignment:
Q  535 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctactaa 632  Q
    |||||| ||| ||||| |||| ||| |||||| |||| |||||||||| | || |||||| ||||||||| ||  ||||||||| ||||||||||| ||     
T  36339974 tatcctccatctgatcaacccgccttactacaaaatctataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatat 36340073  T
Q  633 aggtgctac 641  Q
    |||||||||    
T  36340074 aggtgctac 36340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 642
Target Start/End: Original strand, 48431602 - 48431686
Alignment:
Q  559 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||| |||| | | |||||| | ||||||| ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  48431602 tactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 606
Target Start/End: Original strand, 10569231 - 10569310
Alignment:
Q  528 atttgattatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag 606  Q
    ||||||||| ||| ||| | ||||||||||| ||||||| |||| | |||||||| | ||||||| ||||||||||||||    
T  10569231 atttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaaccacctaag 10569310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 673
Target Start/End: Original strand, 19908235 - 19908350
Alignment:
Q  559 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttatta 657  Q
    |||||||||||| | |||| ||| | ||||||| ||||| |||||||  ||  |||||  |||||||| ||||| |||||||||||||||| |||  |||    
T  19908235 tactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggtgctaccacaactctctcttta 19908334  T
Q  658 atattttcatttctaa 673  Q
    || || ||||||||||    
T  19908335 attttgtcatttctaa 19908350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 648
Target Start/End: Complemental strand, 1661508 - 1661426
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||| |||||||||| | |||||||  ||||||| || ||  ||||||||| |||||||||||||| |||||||||| |||||    
T  1661508 aatctataggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaact 1661426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 648
Target Start/End: Original strand, 52561843 - 52561897
Alignment:
Q  595 aaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||||| |||||    
T  52561843 aaaccacctaagcctattttctatcatcatttctactaaaggtgctaccccaact 52561897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 647
Target Start/End: Original strand, 8343062 - 8343143
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 647  Q
    |||||| |||||||| | ||||||| |||  |||||||||  || |||||| |||||||||||||||||||| |||| ||||    
T  8343062 aatccacaggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaac 8343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 679
Target Start/End: Complemental strand, 9509388 - 9509283
Alignment:
Q  575 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaa 673  Q
    ||||||| | ||||||| |||||| |||||||  ||||||  | |||||||||||||| |||||||||| ||||| |||   ||||  | ||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T
Q  674 tcatat 679  Q
    ||||||    
T  9509288 tcatat 9509283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 32404737 - 32404806
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| | |||||| |||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  32404737 aggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc 32404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 535 - 648
Target Start/End: Original strand, 43752118 - 43752233
Alignment:
Q  535 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 632  Q
    |||||| ||| |||||||| |||| |||||||||||| |||||||||| | ||||||||||||| ||||||||  ||||||| | || |||||||||||     
T  43752118 tatcctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactat 43752217  T
Q  633 aggtgctaccacaact 648  Q
    |||||||||| |||||    
T  43752218 aggtgctaccccaact 43752233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 631
Target Start/End: Original strand, 9578914 - 9578972
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 631  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  9578914 aggtcttctctctacatgtccaaaccacctaagtctattttacatcatctttactacta 9578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 642
Target Start/End: Original strand, 23714439 - 23714541
Alignment:
Q  542 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 639  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  23714439 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 23714538  T
Q  640 acc 642  Q
    |||    
T  23714539 acc 23714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 642
Target Start/End: Original strand, 24102111 - 24102213
Alignment:
Q  542 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 639  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  24102111 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 24102210  T
Q  640 acc 642  Q
    |||    
T  24102211 acc 24102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 606
Target Start/End: Complemental strand, 3481252 - 3481180
Alignment:
Q  535 tatccttcatttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag 606  Q
    |||||| ||| |||||||| |||||  ||||| |||| |||||||||| | ||||||||||||||||||||||    
T  3481252 tatcctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 648
Target Start/End: Complemental strand, 18958959 - 18958903
Alignment:
Q  593 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 642
Target Start/End: Original strand, 45367837 - 45367905
Alignment:
Q  575 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||| | |||||||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  45367837 ggtcttctctctacatgtccaaaccatctaaggttattttctaccaacttttctactataggtgctacc 45367905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 642
Target Start/End: Complemental strand, 8180857 - 8180782
Alignment:
Q  568 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||| |||||||| | ||||||| |||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  8180857 atccacaggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 8180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 648
Target Start/End: Complemental strand, 12141663 - 12141540
Alignment:
Q  527 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttt 624  Q
    ||||||| ||||||  || |||||||| ||||| |||| | |||| | ||||||||   |||| || ||||||||||||||  | ||||||| |||||||    
T  12141663 aatttgactatcctcaatctgatctactctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttt 12141564  T
Q  625 tctactaaaggtgctaccacaact 648  Q
    ||||||| |||||||||| |||||    
T  12141563 tctactataggtgctaccccaact 12141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 642
Target Start/End: Complemental strand, 25834758 - 25834683
Alignment:
Q  568 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||| |||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  25834758 atccacaggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 25834683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 42543339 - 42543272
Alignment:
Q  542 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagtt 608  Q
    |||||||||||| |||||| ||||| |||||| |||||||| |  |||||| ||||||||||||||||    
T  42543339 catttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaaccacctaagtt 42543272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 675
Target Start/End: Complemental strand, 11017339 - 11017285
Alignment:
Q  619 atcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 675  Q
    ||||||||||||| |||||||||| ||||| |||  |||||||||||||| ||||||    
T  11017339 atcttttctactataggtgctacctcaactctct--ttaatattttcattcctaatc 11017285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 642
Target Start/End: Complemental strand, 19024239 - 19024182
Alignment:
Q  586 tacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| | || ||||||||||    
T  19024239 tacatgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacc 19024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 648
Target Start/End: Original strand, 14389339 - 14389453
Alignment:
Q  535 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 633  Q
    |||||| ||| |||||||  ||||| |||||| | || |||||||||| | ||||||||||||||||||||||||  |||||| |||||||||||| | |    
T  14389339 tatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagtttgtttccaccatcttttctacgata 14389438  T
Q  634 ggtgctaccacaact 648  Q
    ||||||||| |||||    
T  14389439 ggtgctacctcaact 14389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 648
Target Start/End: Original strand, 9593797 - 9593992
Alignment:
Q  453 tccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatcta--tcttgaagaatttgattatccttcatttgatc 550  Q
    ||||||||| ||| |||| |||  ||||||||||||||||||| ||  ||||||| ||||| ||||  ||||||    ||||| | |||| ||| |||||    
T  9593797 tccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttcctctacctcttga----tttgactctcctccatctgatc 9593892  T
Q  551 taccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||| || || ||||||  ||| | | |||||| | ||||||| ||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||    
T  9593893 tactcttcttactacagcatctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaact 9593992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 608228 - 608159
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| | |||||||||||||||| |||||  ||||||| |||| ||||||||||| ||||| ||||    
T  608228 aggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgatacc 608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 12645266 - 12645343
Alignment:
Q  165 atacttatcggagaggagatcaacccataatttattagaatattgaaacatatcccaaactagcttctcaaggagaca 242  Q
    |||||| || || |||||||||||||||||||| || ||  |||| |  ||||||||||||||||||  |||||||||    
T  12645266 atacttgtcagaaaggagatcaacccataattttttggagcattggacaatatcccaaactagcttccaaaggagaca 12645343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 674
Target Start/End: Complemental strand, 33084129 - 33084028
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttcta 672  Q
    |||||||| | ||||||  ||||||||||||||| || |||| | |||||||||||| | |||||||||| ||||| |||   ||||||  |||||||||    
T  33084129 aggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttcta 33084030  T
Q  673 at 674  Q
    ||    
T  33084029 at 33084028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 536 - 648
Target Start/End: Complemental strand, 79623 - 79509
Alignment:
Q  536 atccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaa 633  Q
    ||||| ||||||||| || ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| | | ||||||| |||||||||||||| |    
T  79623 atcctccatttgatcgactctccttactacagaatctataggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactata 79524  T
Q  634 ggtgctaccacaact 648  Q
    ||| ||||| |||||    
T  79523 ggtactaccccaact 79509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 648
Target Start/End: Complemental strand, 33667297 - 33667212
Alignment:
Q  564 cataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||| |||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaact 33667212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 652
Target Start/End: Original strand, 31636132 - 31636210
Alignment:
Q  575 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 652  Q
    ||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||||||    
T  31636132 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttct 31636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 679
Target Start/End: Complemental strand, 6889075 - 6888958
Alignment:
Q  563 acataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatat 661  Q
    |||||||||| | |||||| | ||||||||||||||||| ||||  ||||||||| |||||||||  ||| | |||||||| ||||| | |   ||||||    
T  6889075 acataatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatat 6888976  T
Q  662 tttcatttctaatcatat 679  Q
    | ||||||||||||||||    
T  6888975 tgtcatttctaatcatat 6888958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 648
Target Start/End: Complemental strand, 14667815 - 14667759
Alignment:
Q  593 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  14667815 ccaaaccacctaagtctattttccaccatcttttctactataggtgctaccccaact 14667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 642
Target Start/End: Complemental strand, 27944 - 27895
Alignment:
Q  594 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  27944 caaaccacctaagcctattttccatcatcttttctactataggtgctacc 27895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 679
Target Start/End: Complemental strand, 6859467 - 6859346
Alignment:
Q  559 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 657  Q
    ||||||| |||||| | |||||| | |||| ||||||||||||||| |  | ||||||| |||||| |  |||| |||||||||| ||||| |||   ||    
T  6859467 tactacagaatccacaagtcttctctctacgtgtccaaaccacctatgcctgttttccaccatcttcttcactataggtgctaccccaactctctgtcta 6859368  T
Q  658 atattttcatttctaatcatat 679  Q
    ||||| ||||||||||||||||    
T  6859367 atattgtcatttctaatcatat 6859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 675
Target Start/End: Complemental strand, 14749385 - 14749276
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 665  Q
    |||||| |||||||| | |||||||||||||||| |||||| || |||| | ||  |||||||||| |||||||||  ||||| |||   |||| |||||    
T  14749385 aatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttc 14749286  T
Q  666 atttctaatc 675  Q
    ||||||||||    
T  14749285 atttctaatc 14749276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 632
Target Start/End: Complemental strand, 42199386 - 42199298
Alignment:
Q  546 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 632  Q
    |||||||| ||||| |||||| |||| | | |||||| | ||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctactaa 42199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 24872993 - 24872946
Alignment:
Q  183 atcaacccataatttattagaatattgaaacatatcccaaactagctt 230  Q
    ||||||||||||||| || |||||||||| |||||||||||| |||||    
T  24872993 atcaacccataatttctttgaatattgaaccatatcccaaacaagctt 24872946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 674
Target Start/End: Complemental strand, 37124603 - 37124539
Alignment:
Q  608 tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 674  Q
    ||||||||||||||||||| |||| |||||||||| | ||| |||  ||||| ||||||||||||||    
T  37124603 tattttccatcatcttttcaactataggtgctaccccgactctct--ttaattttttcatttctaat 37124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 648
Target Start/End: Complemental strand, 2713062 - 2712940
Alignment:
Q  528 atttgattatccttcatttgatctaccctcctac-tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatctttt 625  Q
    |||||| | |||| ||| |||||||| ||||| | |||| |||||| |||||||| | ||||||| ||||||||||||||| || | || | ||||||||    
T  2713062 atttgactctcctccatctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatctttt 2712963  T
Q  626 ctactaaaggtgctaccacaact 648  Q
      |||| |||||||||| |||||    
T  2712962 agactataggtgctaccccaact 2712940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 28676666 - 28676597
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| | ||||||| | ||||||||||||  ||||||||| |||||||||||||| || |||||||    
T  28676666 aggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactatagctgctacc 28676597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 585 - 675
Target Start/End: Original strand, 54365199 - 54365287
Alignment:
Q  585 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 675  Q
    ||||||| |||||||||||||| ||||||||  ||| |||||||||| |||||||||| ||||| |||   ||||||||||||||||||||    
T  54365199 ctacatgcccaaaccacctaagctattttccgccatattttctactataggtgctaccccaactctct--ctaatattttcatttctaatc 54365287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 648
Target Start/End: Original strand, 36820140 - 36820247
Alignment:
Q  543 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgcta 640  Q
    ||||||||||||||||| ||||||||||| || ||||||| |  |||||||| ||||||||||||  || |||||| ||||||| ||| || ||||||||    
T  36820140 atttgatctaccctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgcta 36820239  T
Q  641 ccacaact 648  Q
    || |||||    
T  36820240 ccccaact 36820247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 50960841 - 50960919
Alignment:
Q  571 cataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  50960841 cataggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaact 50960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 648
Target Start/End: Complemental strand, 26490375 - 26490311
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  26490375 ctacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaact 26490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 640
Target Start/End: Original strand, 42510187 - 42510292
Alignment:
Q  535 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 632  Q
    |||||| ||| |||||||| ||||| || ||| |||| |||||||||| |  |||||||||||||||||||||  |||||||||  |||||||||||||     
T  42510187 tatcctccatctgatctactctccttaccacaaaatctataggtcttctc--tacatgtccaaaccacctaagcctattttccactatcttttctactat 42510284  T
Q  633 aggtgcta 640  Q
    ||||||||    
T  42510285 aggtgcta 42510292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 648
Target Start/End: Original strand, 44134056 - 44134116
Alignment:
Q  589 atgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||    
T  44134056 atgtccaaaccacctaagtctattttccaccatcttttctactagaggcgctaccccaact 44134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 652
Target Start/End: Complemental strand, 27917630 - 27917562
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 652  Q
    |||||||||||||||| |||||  ||||| | | |||||||||||||| |||||||||| |||||||||    
T  27917630 ctacatgtccaaaccatctaagcctatttcctaccatcttttctactataggtgctaccccaactttct 27917562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 675
Target Start/End: Original strand, 39600770 - 39600994
Alignment:
Q  453 tccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttcatttgatcta 552  Q
    ||||||||| |||||||| | |  ||| ||||||||||||||| |   ||||||| ||||| |||| ||     ||| ||| ||||||  || |||||||    
T  39600770 tccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta 39600869  T
Q  553 ccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaacttt 650  Q
    | |||||  ||||| |||| | |||||||| |  |||||| | |||||||||||| || ||||||| |||||||||||||| |||| ||||| ||||| |    
T  39600870 ctctcctcgctacagaatctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactct 39600969  T
Q  651 cttattaatattttcatttctaatc 675  Q
    ||   |||| || ||||||||||||    
T  39600970 ctctctaatgttgtcatttctaatc 39600994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 642
Target Start/End: Original strand, 49503766 - 49503834
Alignment:
Q  575 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 49503834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 647
Target Start/End: Complemental strand, 54128438 - 54128375
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 647  Q
    ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| ||||    
T  54128438 ctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaac 54128375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 642
Target Start/End: Complemental strand, 36143476 - 36143367
Alignment:
Q  535 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 632  Q
    |||||| |||||||||||| |||| ||||||| |||| |||||||||  | ||| ||| ||||||||||||||| ||||||||| ||||| |||| |||     
T  36143476 tatcctccatttgatctactctccatactacagaatctataggtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctat 36143377  T
Q  633 aggtgctacc 642  Q
    ||||||||||    
T  36143376 aggtgctacc 36143367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 593 - 673
Target Start/End: Original strand, 45512725 - 45512808
Alignment:
Q  593 ccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact--ttcttattaatattttcatttctaa 673  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||   |||  |||||||||||||||||||    
T  45512725 ccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctctttaatattttcatttctaa 45512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 675
Target Start/End: Original strand, 44681243 - 44681352
Alignment:
Q  567 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 665  Q
    |||| |||||||||| | ||| || ||||||||  ||||| |||||||||| ||||||||||| || |||||||||||||||| |||   |||| || ||    
T  44681243 aatctataggtcttctctctagatttccaaaccttctaagcttattttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtc 44681342  T
Q  666 atttctaatc 675  Q
    ||||||||||    
T  44681343 atttctaatc 44681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 641
Target Start/End: Original strand, 43904828 - 43904947
Alignment:
Q  527 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag----ttattttccatcatc 621  Q
    ||||||| |||||| ||| |||||||  || || ||||||  ||| |||||||||| | ||||||||||||||||||||||    |||||||||  ||||    
T  43904828 aatttgactatcctccatctgatctattcttcttactacaacatctataggtcttctctctacatgtccaaaccacctaagcttattattttcctccatc 43904927  T
Q  622 ttttctactaaaggtgctac 641  Q
    |||||||||| || ||||||    
T  43904928 ttttctactatagatgctac 43904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 675
Target Start/End: Complemental strand, 44373879 - 44373745
Alignment:
Q  543 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 640  Q
    ||||||||||| ||| | |||||| |||| ||||||||| || |||||||  ||||||||  |||  ||||||||| |||||||||||||  ||||||||    
T  44373879 atttgatctactctctttactacaaaatctataggtctttactctacatgctcaaaccactcaagcctattttccaccatcttttctactttaggtgcta 44373780  T
Q  641 ccacaactttcttattaatattttcatttctaatc 675  Q
    |  ||||| ||    ||||||||||||||||||||    
T  44373779 ctccaactctcactctaatattttcatttctaatc 44373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 642
Target Start/End: Original strand, 18752098 - 18752155
Alignment:
Q  585 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||||||||||| ||||| ||||||| | || ||||||||||| ||||||||||    
T  18752098 ctacatgtccaaaccatctaagctattttctaccaacttttctactataggtgctacc 18752155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 33511407 - 33511325
Alignment:
Q  594 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatat 679  Q
    |||||||||||||| |||||| |||||| |||||||| | ||||| |||| ||||| |||    |||||||||||||||||||||||    
T  33511407 caaaccacctaagtctatttttcatcattttttctaccataggtgttaccccaactctct----aatattttcatttctaatcatat 33511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 648
Target Start/End: Original strand, 41444548 - 41444612
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| |||||||||| |||||    
T  41444548 ctacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 675
Target Start/End: Original strand, 13171879 - 13171962
Alignment:
Q  593 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 675  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||| || ||||| |||   |||| || ||||||||||||    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaatc 13171962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 41971991 - 41972046
Alignment:
Q  576 gtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctact 630  Q
    |||||| | ||||||||||||||||||| || |||||||||| |||||||||||||    
T  41971991 gtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctact 41972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 642
Target Start/End: Complemental strand, 45419297 - 45419239
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||| ||||||||||||||| ||||||  | |||||||||||||| ||||||||||    
T  45419297 ctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctacc 45419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 679
Target Start/End: Original strand, 10824335 - 10824477
Alignment:
Q  535 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 632  Q
    |||||| |||||||||||| |||| ||||||| |||| ||  |||||  | ||| ||  ||||||||||||||  ||||||| | |||||||||||||      
T  10824335 tatcctccatttgatctactctccatactacaaaatctatgagtcttttctctaaatacccaaaccacctaagcctattttcgaccatcttttctacttt 10824434  T
Q  633 aggtgctaccacaactttcttattaatattttcatttctaatcatat 679  Q
    ||||||| || ||||| |||    |||||||| ||||||||||||||    
T  10824435 aggtgctgcctcaactctct----aatatttttatttctaatcatat 10824477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 648
Target Start/End: Original strand, 48736077 - 48736185
Alignment:
Q  542 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 639  Q
    |||||||||||| |||||| |||||||||||| |||||||| | |||||||  |||||||||||||| || ||||   |||||||||||||  |||||||    
T  48736077 catttgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttctcccatcttttctactgtaggtgct 48736176  T
Q  640 accacaact 648  Q
    ||| |||||    
T  48736177 accccaact 48736185  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 648
Target Start/End: Original strand, 36514389 - 36514493
Alignment:
Q  546 tgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 643  Q
    |||||||| |||| ||||||| |||||| | ||| || | ||||||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||     
T  36514389 tgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccc 36514488  T
Q  644 caact 648  Q
    |||||    
T  36514489 caact 36514493  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 642
Target Start/End: Original strand, 36101964 - 36102045
Alignment:
Q  562 tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||| |||| |||||||||| | ||||||  ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  36101964 tacaaaatctataggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttctattataggtgctacc 36102045  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 648
Target Start/End: Original strand, 7189448 - 7189512
Alignment:
Q  585 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||||| |||||||||||||| |||||||| | |||||||||||||| |||||| ||| |||||    
T  7189448 ctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgcgaccccaact 7189512  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 642
Target Start/End: Complemental strand, 42187556 - 42187472
Alignment:
Q  559 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||||||| | ||| |||| |  |||||| ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  42187556 tactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctacc 42187472  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 642
Target Start/End: Original strand, 26742118 - 26742176
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    |||||||| ||||||||||||   ||||||||| |||||||||||||| ||||||||||    
T  26742118 ctacatgttcaaaccacctaatcctattttccaccatcttttctactataggtgctacc 26742176  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 642
Target Start/End: Complemental strand, 40169709 - 40169651
Alignment:
Q  585 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 642  Q
    ||||||| ||||||||||||||  ||||||||| |||||||||||||| | ||||||||    
T  40169709 ctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctacc 40169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 47848732 - 47848670
Alignment:
Q  587 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||||| ||| |||||| |||||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaact 47848670  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 607
Target Start/End: Complemental strand, 16013371 - 16013326
Alignment:
Q  562 tacataatccataggtcttcacactacatgtccaaaccacctaagt 607  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  16013371 tacataatccacaggtcttctcactacatgcccaaatcacctaagt 16013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 648
Target Start/End: Original strand, 44079 - 44154
Alignment:
Q  574 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 648  Q
    |||||||| | ||||||| ||||||||||||||  ||||||||  |||||||||||||| |||||||||| |||||    
T  44079 aggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaact 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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