View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_100 (Length: 226)
Name: NF1711_high_100
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 30363238 - 30363443
Alignment:
| Q |
6 |
agttttggtatttgtggataccttcttagagttctgttgcttcttagaaatagtggaaggggcattgacactttttcgcaatgctggttttggtgtgcaa |
105 |
Q |
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| T |
30363238 |
agttttggtatttgtggataccttcttagagttctgttgcttcttagaattagtggaagtggcattgacactttttcgcaatgctggttttggtgtgcaa |
30363337 |
T |
|
| Q |
106 |
gcatcttttcctacttcaacagatgatccccttgtggatgttgctgtgtttaagatctcccctttactcattttcttaccaacaccatcctgatagatag |
205 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30363338 |
gcatcttttcctacttcaacagatgctccccttgtggatgttgctgtgtttaagatctcccctttactcattttcttaccaacaccatcctgatagatag |
30363437 |
T |
|
| Q |
206 |
atagat |
211 |
Q |
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|||||| |
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| T |
30363438 |
atagat |
30363443 |
T |
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