View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_101 (Length: 218)
Name: NF1711_high_101
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_101 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 27245269 - 27245112
Alignment:
| Q |
48 |
tggaccaccaatggacaaagacatatcacatatgccaaactaagcagaaactaagccgtaaagaatgtctttaaaacaataattcacttttaaaaatagt |
147 |
Q |
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| T |
27245269 |
tggaccaccaatggacaaagacatatcacatatgccaaactaagcagaaactaagacgtaaagaatgtctttaaaaaaataattcaattttaaaaatagt |
27245170 |
T |
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| Q |
148 |
aaaaatattcctaaacacacatggacatataaattatgtttcttaaaagtaattggta |
205 |
Q |
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||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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| T |
27245169 |
aaaaatattcctaaaaacccatggacgtataaattatgtttcttaaaagtaattggta |
27245112 |
T |
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