View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_11 (Length: 509)
Name: NF1711_high_11
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_11 |
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[»] scaffold1786 (3 HSPs) |
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[»] scaffold1609 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 23127220 - 23126855
Alignment:
Q |
9 |
aattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaat |
108 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
23127220 |
aattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaat |
23127121 |
T |
|
Q |
109 |
tcttccatgacatatatatttagtctcttgcaggtaactttaattgtatctttgtcaaaaaatatttgtgtttggaatctcatagcagaaagaaaacgtt |
208 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
23127120 |
tcttccatgacacatatatttagtctcttgcaggtaactttaattgtatctttgtcaaaaaatatttgtgtttggaatctcatagcagaaagaaaacgtt |
23127021 |
T |
|
Q |
209 |
gattttccgtcatagcaaacgtgatttcagttaaaaatgtaaatgaaaaaatttgaacagaactgtttacagagaaactcttctatatacacaactacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
23127020 |
gattttccgtcatagcaaacgtgatttcagttaaaaatgtaaatgaaaaaatttgaacagaactgtttacagagaaactcttctatatacacaactacaa |
23126921 |
T |
|
Q |
309 |
atgataaatatttaagacacactcacatcaaatgtaaaataaaattaaacgatgttgattgatgtg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
23126920 |
atgataaatatttaagacacactcacatcaaatgtaaaataaaattaaacgatgttgattgatgtg |
23126855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 23126820 - 23126736
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctctttacaaccttgtctagcaaacttctt |
493 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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T |
23126820 |
tgtgagtgtgcctaaatatttatcatttgtgattgtgtctatagaagagtttctcctctttacaaccttgtctagcaaacttctt |
23126736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 32803170 - 32803107
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgt |
343 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||| |
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T |
32803170 |
agagaaactcttctatcaatacaactacaaatgataaatattt-agacacactcatatcaaatgt |
32803107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 23126766 - 23126832
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||||||| || ||||||||||| ||||| |||| |
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|
T |
23126766 |
gagaaactcttctatagacacaatcacaaatgataaatattt-aggcacactcacataaaatggaaaa |
23126832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5334566 - 5334612
Alignment:
Q |
19 |
catttttggatgaagtttctagattttatgcatggtaaatttttgta |
65 |
Q |
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||||||||| ||||||||||||||||||| |||||| |||||||||| |
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T |
5334566 |
catttttggctgaagtttctagattttatccatggtgaatttttgta |
5334612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 5098646 - 5098723
Alignment:
Q |
49 |
catggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttccatgacatatata |
126 |
Q |
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|||||||||||| ||||||||||| || |||| ||| ||| |||||||||||||||||||||||| |||||||| |
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T |
5098646 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtaagttgttctgttacaattcttccatgtcatatata |
5098723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5255917 - 5255865
Alignment:
Q |
19 |
catttttggatgaagtttctagattttatgcatggtaaatttttgtaatccta |
71 |
Q |
|
|
||||||||| ||||||||||||||||||| |||| ||| ||| |||||||||| |
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|
T |
5255917 |
catttttggctgaagtttctagattttatccatgctaagtttatgtaatccta |
5255865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 5100554 - 5100520
Alignment:
Q |
90 |
taatttgttctgttacaattcttccatgacatata |
124 |
Q |
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|
|||||||||||||||||||||||||||| |||||| |
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|
T |
5100554 |
taatttgttctgttacaattcttccatgtcatata |
5100520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 5180585 - 5180533
Alignment:
Q |
19 |
catttttggatgaagtttctagattttatgcatggtaaatttttgtaatccta |
71 |
Q |
|
|
|||||| || |||||||| |||||||||| |||| ||| |||||||||||||| |
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|
T |
5180585 |
cattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
5180533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 47985161 - 47985068
Alignment:
Q |
22 |
ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca |
115 |
Q |
|
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|||||| ||||||||||||||||||| |||||||||||||||||||||||| | || ||||| || | |||||||| |||||||||||||||| |
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T |
47985161 |
ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca |
47985068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 47994448 - 47994355
Alignment:
Q |
22 |
ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca |
115 |
Q |
|
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| | || ||||| || | |||||||| |||||||||||||||| |
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|
T |
47994448 |
ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca |
47994355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 48003735 - 48003642
Alignment:
Q |
22 |
ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca |
115 |
Q |
|
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| | || ||||| || | |||||||| |||||||||||||||| |
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|
T |
48003735 |
ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca |
48003642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 48013020 - 48012927
Alignment:
Q |
22 |
ttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttctgttacaattcttcca |
115 |
Q |
|
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| | || ||||| || | |||||||| |||||||||||||||| |
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|
T |
48013020 |
ttttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca |
48012927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 54449761 - 54449828
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||||| ||||||| | ||||||||||||||| ||||||| |||||| ||||| |||| |
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|
T |
54449761 |
agagaaactcttctatagacacaaccataaatgataaatattt-agacacattcacattaaatgcaaaa |
54449828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 25750944 - 25750999
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||| |
|
|
T |
25750944 |
tgtgaatgtgcttaaatatttatcatttgtgattgtgtctatacaagattttctcc |
25750999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 46690571 - 46690638
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||| ||| ||||| ||||||||||||||||||| |||| ||| |||||||| |||| |
|
|
T |
46690571 |
agagaaactcttctacatatacaaccgcaaatgataaatatttaag-cacattcatatcaaatgaaaaa |
46690638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 30442388 - 30442443
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
|||||||| | | |||||||||||||||||| |||||||||||| |||||||||| |
|
|
T |
30442388 |
tgtgagtgcggctaaatatttatcatttgtggttgtgtctataatggagtttctcc |
30442443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 54449913 - 54449964
Alignment:
Q |
415 |
tgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctc |
466 |
Q |
|
|
|||||||||||||||||||||| ||||||||| ||| |||||||| ||||| |
|
|
T |
54449913 |
tgtgcccaaatatttatcatttacgattgtgtccatagaagagtttatcctc |
54449964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 54449816 - 54449762
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
||||| |||| | ||||||||||||||| || ||||||||||| ||||||||||| |
|
|
T |
54449816 |
tgtgaatgtgtctaaatatttatcatttatggttgtgtctatagaagagtttctc |
54449762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 19594526 - 19594485
Alignment:
Q |
422 |
aaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
||||||||||||||||||||||||| ||| ||||||||||| |
|
|
T |
19594526 |
aaatatttatcatttgtgattgtgttcatataagagtttctc |
19594485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 19582310 - 19582270
Alignment:
Q |
420 |
ccaaatatttatcatttgtgattgtgtctataaaagagttt |
460 |
Q |
|
|
||||||||||||||||||||||| |||| ||| |||||||| |
|
|
T |
19582310 |
ccaaatatttatcatttgtgattttgtccatataagagttt |
19582270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 19594680 - 19594613
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||| ||||||||| | |||||| ||||||||||||||| ||||||| | |||||||| |||||| |
|
|
T |
19594680 |
agagaaattcttctatagaaacaactttaaatgataaatattt-agacacatttacatcaaaagtaaaa |
19594613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 50293639 - 50293587
Alignment:
Q |
411 |
tgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
||||||| ||| ||||||||||||||||| |||||| ||| ||||||||||| |
|
|
T |
50293639 |
tgagtgtacccgaatatttatcatttgtgcttgtgtttatggaagagtttctc |
50293587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 38734606 - 38734673
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
|
|
T |
38734606 |
agagaaactcttctataaacacaactataaatgataaatattt-agacacactcacatcaaatgcaaaa |
38734673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 41982586 - 41982637
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt |
460 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
T |
41982586 |
tgtgagtgtgcccaaatatttatcatttgtatttgtgtctatagaagagttt |
41982637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 4381709 - 4381657
Alignment:
Q |
413 |
agtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcct |
465 |
Q |
|
|
||||||||||||||||||||||||||| || ||| |||||||| ||||||||| |
|
|
T |
4381709 |
agtgtgcccaaatatttatcatttgtggttatgtttataaaagtgtttctcct |
4381657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 4381852 - 4381785
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||| || |||| |||||||||||||||||||||||| ||| |||||||||||||||| |||| |
|
|
T |
4381852 |
agagaaactattttataggcacaactacaaatgataaatattt-agatacactcacatcaaatgcaaaa |
4381785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 41982444 - 41982507
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgta |
344 |
Q |
|
|
||||||||||| |||| | |||| |||||||||||||||||| |||||||||||||| ||||||| |
|
|
T |
41982444 |
gagaaactcttttatagatacaaatacaaatgataaatattt-agacacactcacattaaatgta |
41982507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 41982637 - 41982574
Alignment:
Q |
283 |
aaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||| |||| |
|
|
T |
41982637 |
aaactcttctatagacacaaatacaaatgataaatattt-gggcacactcacatcaaatgaaaaa |
41982574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 2858118 - 2858161
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatattta |
322 |
Q |
|
|
||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
T |
2858118 |
agagaaactcttctatagacacaaccacaaatgataaatattta |
2858161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 41982498 - 41982443
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
|||||||||| | ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
T |
41982498 |
tgtgagtgtgtctaaatatttatcatttgtatttgtatctataaaagagtttctcc |
41982443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 2858160 - 2858119
Alignment:
Q |
422 |
aaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
|||||||||||||||||| ||||||||||| ||||||||||| |
|
|
T |
2858160 |
aaatatttatcatttgtggttgtgtctatagaagagtttctc |
2858119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 2846297 - 2846340
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatattta |
322 |
Q |
|
|
||||||||||||||||| |||||| |||||||||||||||||| |
|
|
T |
2846297 |
agagaaactcttctataggcacaaccacaaatgataaatattta |
2846340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 2846497 - 2846432
Alignment:
Q |
282 |
gaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaat |
348 |
Q |
|
|
||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
T |
2846497 |
gaaactcttctatgaacacaagcacaaatgataaatattt-ggacgcactcacatcaaatggaaaat |
2846432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 2846339 - 2846298
Alignment:
Q |
422 |
aaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
|||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
T |
2846339 |
aaatatttatcatttgtggttgtgcctatagaagagtttctc |
2846298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 2846445 - 2846497
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttc |
461 |
Q |
|
|
|||||||| | |||||||||||||||||||| |||||| ||| ||||||||| |
|
|
T |
2846445 |
tgtgagtgcgtccaaatatttatcatttgtgcttgtgttcatagaagagtttc |
2846497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 8245357 - 8245423
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||||||||||||| |||||| |||||||||||||||||| || ||||||||||||||||| |||| |
|
|
T |
8245357 |
gagaaactcttctataaacacaattacaaatgataaatattt-aggcacactcacatcaaatgcaaaa |
8245423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 467
Target Start/End: Complemental strand, 8245411 - 8245353
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcctct |
467 |
Q |
|
|
|||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| |
|
|
T |
8245411 |
tgtgagtgtgcctaaatatttatcatttgtaattgtgtttatagaagagtttctcctct |
8245353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 42107162 - 42107095
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||||||||||| || ||||||||||||||||||||||||| | ||||||||| |||||||| |||| |
|
|
T |
42107162 |
agagaaactcttctttaaacacaactacaaatgataaatattt-acacacactcatatcaaatgcaaaa |
42107095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 8245552 - 8245486
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||| |||| |
|
|
T |
8245552 |
gagaaactcttctatggacacaactataaatgataaatattt-agaaacactcacatcaaatggaaaa |
8245486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 23391918 - 23391867
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt |
460 |
Q |
|
|
||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
T |
23391918 |
tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt |
23391867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 23392049 - 23391983
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||||||||| |||| |
|
|
T |
23392049 |
gagaaactcttctatagacacaatcataaatgataactattt-agacacactcacatcaaatgcaaaa |
23391983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 23391995 - 23392050
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
|||||||||| | ||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
T |
23391995 |
tgtgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctcc |
23392050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 42106964 - 42107030
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||| |||| |
|
|
T |
42106964 |
gagaaactcttctatggactcaaccacaaatgataaatattt-ggacacactcacatcaaatggaaaa |
42107030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 42107018 - 42106964
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
|||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||||| |
|
|
T |
42107018 |
tgtgagtgtgtccaaatatttatcatttgtggttgagtccatagaagagtttctc |
42106964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 1035403 - 1035358
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaa |
454 |
Q |
|
|
||||||||| | ||||||||||||||||||||||||||||| |||| |
|
|
T |
1035403 |
tgtgagtgtactcaaatatttatcatttgtgattgtgtctacaaaa |
1035358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 2137630 - 2137586
Alignment:
Q |
422 |
aaatatttatcatttgtgattgtgtctataaaagagtttctcctc |
466 |
Q |
|
|
||||||||||||||| ||||||||| |||| |||||| ||||||| |
|
|
T |
2137630 |
aaatatttatcatttatgattgtgtttatagaagagtctctcctc |
2137586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 9417265 - 9417315
Alignment:
Q |
415 |
tgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcct |
465 |
Q |
|
|
||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
T |
9417265 |
tgtgcccaaatatttatcatttgtggttgtgtttatagaagagtttctcct |
9417315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 8170239 - 8170198
Alignment:
Q |
422 |
aaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| |||||| |
|
|
T |
8170239 |
aaatatttatcatttgtgattgtgtctatagaagactttctc |
8170198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 9417313 - 9417272
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatattt |
321 |
Q |
|
|
|||||||||||||||| ||||||| ||||||||||||||||| |
|
|
T |
9417313 |
gagaaactcttctataaacacaaccacaaatgataaatattt |
9417272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 29407675 - 29407735
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaat |
341 |
Q |
|
|
|||||||||||||||| | ||||| ||||||||||||||||| | ||||| ||||||||||| |
|
|
T |
29407675 |
gagaaactcttctatagatacaaccacaaatgataaatatttga-acacattcacatcaaat |
29407735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 29407717 - 29407673
Alignment:
Q |
421 |
caaatatttatcatttgtgattgtgtctataaaagagtttctcct |
465 |
Q |
|
|
||||||||||||||||||| |||| |||||| ||||||||||||| |
|
|
T |
29407717 |
caaatatttatcatttgtggttgtatctatagaagagtttctcct |
29407673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 8170198 - 8170264
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||| ||||||||| |||||| ||||||||||||||||| ||| | ||||||||||||| ||||| |
|
|
T |
8170198 |
gagaaagtcttctatagacacaatcacaaatgataaatattt-agatatactcacatcaaatataaaa |
8170264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 38735969 - 38736024
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||||| |
|
|
T |
38735969 |
tgtgattgtgcccaagtatttatcatttgtggttgtgttcatagaagagtttctcc |
38736024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 39142017 - 39141950
Alignment:
Q |
279 |
agagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||||| ||| |||||||||||||||||||||| ||| | |||||||||||| |||| |
|
|
T |
39142017 |
agagaaactcttctatagacatgactacaaatgataaatatttaa-acatattcacatcaaatgcaaaa |
39141950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 6924255 - 6924308
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttct |
462 |
Q |
|
|
||||||||||||||||||||||| |||||| |||| | |||| |||||||||| |
|
|
T |
6924255 |
tgtgagtgtgcccaaatatttatactttgtggttgtatttatataagagtttct |
6924308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1786 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold1786
Description:
Target: scaffold1786; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 1266 - 1317
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt |
460 |
Q |
|
|
||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
T |
1266 |
tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt |
1317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1786; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 1185 - 1132
Alignment:
Q |
411 |
tgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctcc |
464 |
Q |
|
|
|||||||| | ||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
T |
1185 |
tgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctcc |
1132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1786; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 1133 - 1199
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
|||||||||||||||| |||||| | ||||||||| ||||| ||||||||||| |||||||| |||| |
|
|
T |
1133 |
gagaaactcttctatagacacaatcataaatgataactattt-agacacactcatatcaaatgcaaaa |
1199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1609
Description:
Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 14 - 65
Alignment:
Q |
409 |
tgtgagtgtgcccaaatatttatcatttgtgattgtgtctataaaagagttt |
460 |
Q |
|
|
||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
T |
14 |
tgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt |
65 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 6407870 - 6407936
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||||||| ||||||||| ||||||||||||||| ||| ||| |||||||||||| |||| |
|
|
T |
6407870 |
gagaaactcttctatggacacaactataaatgataaatattt-agaaacattcacatcaaatggaaaa |
6407936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 6408065 - 6407999
Alignment:
Q |
280 |
gagaaactcttctatatacacaactacaaatgataaatatttaagacacactcacatcaaatgtaaaa |
347 |
Q |
|
|
||||||||||| |||| ||| || |||||||||||||||||| ||||||||| |||||||||| |||| |
|
|
T |
6408065 |
gagaaactcttttataaacataattacaaatgataaatattt-agacacacttacatcaaatgcaaaa |
6407999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 6408015 - 6408065
Alignment:
Q |
413 |
agtgtgcccaaatatttatcatttgtgattgtgtctataaaagagtttctc |
463 |
Q |
|
|
|||||| | ||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
T |
6408015 |
agtgtgtctaaatatttatcatttgtaattatgtttataaaagagtttctc |
6408065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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