View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_12 (Length: 490)
Name: NF1711_high_12
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 41740278 - 41739825
Alignment:
| Q |
7 |
attatgctgtagcattcaattttcagttatagcagttgtttgctgcaacattctactattatgtatgttacatcatttacta----taactgatttgtgt |
102 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41740278 |
attatgctgtagcattcagttttcagttatagcagttgtttgctgcaacattctactattatgtatgttacatcatttactagtcataactgatttgtgt |
41740179 |
T |
|
| Q |
103 |
tataacttataatactattagttcaaccttgaatttcagttgcataaatatagcatagggtatctctatgtaggtaggtgcttttaggtctgagacatat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
41740178 |
tataacttataatactattagttcaaccttgaatttcagttgcataaatatagcatagggtatctctatgcaggtaggtgcttttaggtgtgagacatat |
41740079 |
T |
|
| Q |
203 |
tcatgtaaactctatgtatcaacttgattttgttcttccctcctcgtagtgaatagtgattaattttgctctatctttcgtgtattaggtctccaaaact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740078 |
tcatgtaaactctatgtatcaacttgattttgttcttccctcctcgtagtgaatagtgattaattttgctctatctttcgtgtattaggtctccaaaact |
41739979 |
T |
|
| Q |
303 |
gacctcgtatatatggacaagcgcgtatatatggacaagcgcttctaaagtgaacaattcattttagagagtaaattgaggaatattaaccgtgataagc |
402 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41739978 |
gacctcgtatatatggacaa------------------gcgcttctaaagtgaacaattcattttagagaggaaattgaggaatattaaccgtgataagc |
41739897 |
T |
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| Q |
403 |
aaattaatatgtgcatcaaccattgatttctcactttactaatactaattactcactttagaggaatcaatc |
474 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41739896 |
aaattaatatgtgcatcaaccattgatttctcacttcactaatactaattactcactttagaggaatcaatc |
41739825 |
T |
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