View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_high_13 (Length: 490)
Name: NF1711_high_13
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 13244764 - 13244450
Alignment:
Q |
19 |
gaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatat |
118 |
Q |
|
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||| | ||||| |
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|
T |
13244764 |
gaacgaagctaagatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatat |
13244665 |
T |
|
Q |
119 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaaca |
218 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
13244664 |
ccatctttcaggcttaaattccaagcaatcatctccccatatttgttgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaaca |
13244565 |
T |
|
Q |
219 |
tggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggt |
318 |
Q |
|
|
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
T |
13244564 |
tgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggt |
13244465 |
T |
|
Q |
319 |
aaacaagcttatcaa |
333 |
Q |
|
|
||||||||||||||| |
|
|
T |
13244464 |
aaacaagcttatcaa |
13244450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 12964118 - 12963797
Alignment:
Q |
19 |
gaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatat |
118 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||| ||| |||||||| ||||| |
|
|
T |
12964118 |
gaacaaagctaatatctttcccaatacaacttctaggacctgcattgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatat |
12964019 |
T |
|
Q |
119 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaaca |
218 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
T |
12964018 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggactaaca |
12963919 |
T |
|
Q |
219 |
tggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggt |
318 |
Q |
|
|
|||| ||||||||||| |||||| ||||| || ||||||||||| | ||||| | ||||||| | |||||||| | |||||| || ||||||||||| | |
|
|
T |
12963918 |
tggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagat |
12963819 |
T |
|
Q |
319 |
aaacaagcttatcaagctcttt |
340 |
Q |
|
|
||||||||||||||||| |||| |
|
|
T |
12963818 |
aaacaagcttatcaagcccttt |
12963797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 339
Target Start/End: Complemental strand, 13081100 - 13080788
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||||||||||||||| ||| ||||| ||||||||||| || ||||||||||| |||||||| || |||| ||| ||||||| | ||||||||||| | |
|
|
T |
13081100 |
ctaatatctttcccaagacagcttcttggacctgcattaaacgctatgaacttataagacggcacttgtataatttgtcctctatctgatatccatctct |
13081001 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
|
|
T |
13081000 |
caggcttaaactccaagcaatcctctccccatatttgctccatccttcccattgcatacaaagaatatattaactttgtatttggactaacatggtctcc |
13080901 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
|||||| ||| |||| ||||||||||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
T |
13080900 |
actaggaagtttatccgatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagc |
13080801 |
T |
|
Q |
327 |
ttatcaagctctt |
339 |
Q |
|
|
||||||||||||| |
|
|
T |
13080800 |
ttatcaagctctt |
13080788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 13271539 - 13271849
Alignment:
Q |
23 |
aaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccat |
122 |
Q |
|
|
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||| ||| |||| || | ||||||||| |
|
|
T |
13271539 |
aaagctaatatctttcccaagacagcttctaggacctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccat |
13271638 |
T |
|
Q |
123 |
ctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggt |
222 |
Q |
|
|
|| ||||||||||| ||||||||||| | ||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
T |
13271639 |
ctctcaggcttaaactccaagcaatcaccaccccatacatgttccattcttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggt |
13271738 |
T |
|
Q |
223 |
gtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaac |
322 |
Q |
|
|
|||||||||||||||||||||| || | ||||||||||| | ||||| | ||||||| | || || |||||||||||||| ||| |||||||||||| |
|
|
T |
13271739 |
gtccactaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaat |
13271838 |
T |
|
Q |
323 |
aagcttatcaa |
333 |
Q |
|
|
|||||||||| |
|
|
T |
13271839 |
cagcttatcaa |
13271849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 28 - 341
Target Start/End: Complemental strand, 19279402 - 19279089
Alignment:
Q |
28 |
taatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttc |
127 |
Q |
|
|
|||||||||| || | ||| ||||| ||||||||||| || |||||||||||||| || || ||||||| ||| ||||||| ||||||||||||| || |
|
|
T |
19279402 |
taatatcttttccgagacagcttctcggacctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctc |
19279303 |
T |
|
Q |
128 |
aggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcca |
227 |
Q |
|
|
|||| |||||| | |||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| |||| |
|
|
T |
19279302 |
aggccgaaattctaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttagactaacatggtctcca |
19279203 |
T |
|
Q |
228 |
ctaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagct |
327 |
Q |
|
|
|||||||||||||| || || | ||||||||||| | ||||| | ||| ||| | |||||||||| ||||||||| ||||||||||| ||||| |||| |
|
|
T |
19279202 |
ctaggtagtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagct |
19279103 |
T |
|
Q |
328 |
tatcaagctctttc |
341 |
Q |
|
|
|||||||||||||| |
|
|
T |
19279102 |
tatcaagctctttc |
19279089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 334
Target Start/End: Original strand, 13094356 - 13094663
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
||||||||||| || |||||| |||| || |||| ||||||||||||||||||||||| || ||||||| ||| |||| || | ||||||||||| | |
|
|
T |
13094356 |
ctaatatctttacctatacaaattctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctct |
13094455 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||| || || || ||||||||||| |||||||| ||| |
|
|
T |
13094456 |
caggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggagtaacatggtatcc |
13094555 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
|||||||||||||||||||||||| ||||| | |||| ||| | | ||||||| | |||||||||||||||||||| |||||||| ||||| || ||| |
|
|
T |
13094556 |
actaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13094655 |
T |
|
Q |
327 |
ttatcaag |
334 |
Q |
|
|
|||||||| |
|
|
T |
13094656 |
ttatcaag |
13094663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 27 - 334
Target Start/End: Original strand, 13129785 - 13130092
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||| |||||| || |||||| |||| || |||| |||||||||| |||||||||||| || ||||||| ||| |||| || | ||||||||||| | |
|
|
T |
13129785 |
ctaagatctttacctatacaaattctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctct |
13129884 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||| || ||||| |||||||||||| |||||||| ||| |
|
|
T |
13129885 |
caggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggactaacatggtatcc |
13129984 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
|||||||||||||||||||||||| | ||| | |||| ||| | | ||||||| | |||||||||||||||||||| |||||||| ||||| || ||| |
|
|
T |
13129985 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13130084 |
T |
|
Q |
327 |
ttatcaag |
334 |
Q |
|
|
|||||||| |
|
|
T |
13130085 |
ttatcaag |
13130092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 13086056 - 13086373
Alignment:
Q |
19 |
gaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatat |
118 |
Q |
|
|
|||||| ||||||||||||||||| |||||||| |||||||||||| || |||||||||||| |||| || ||||| | ||| |||| || | ||||| |
|
|
T |
13086056 |
gaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctatgaacttgcaagatggtacatgcaaaatatgtcctttatctgatat |
13086155 |
T |
|
Q |
119 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaaca |
218 |
Q |
|
|
|||||| || ||||||||||| |||| ||| | ||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||| |||| |
|
|
T |
13086156 |
ccatctctcgggcttaaattcgaagcgatccttaccccatatttgtttcatccttcccattgcatacaaagagtatattaacttagtatttggtttaaca |
13086255 |
T |
|
Q |
219 |
tggtgtccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggt |
318 |
Q |
|
|
| | |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||| | ||||| || | ||||||||| ||||||||||||| |
|
|
T |
13086256 |
taatctccactaggtagtatatcagctttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggt |
13086355 |
T |
|
Q |
319 |
aaacaagcttatcaagct |
336 |
Q |
|
|
| || || |||| ||||| |
|
|
T |
13086356 |
acactagtttattaagct |
13086373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 30368343 - 30368115
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||| |||||| || |||||||||||||| |||| |||||||||||||||||||||||| || ||||||| |||| |||||| | |||| |||||| | |
|
|
T |
30368343 |
ctaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctct |
30368244 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| || || ||||| |||||||||| ||||| | ||| |
|
|
T |
30368243 |
caggcttaaattccatgcaatcttctccccatattttttccatccttcccatagcatacaaagagtaaattaacttggtatttggactaacattctctcc |
30368144 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcac |
255 |
Q |
|
|
|||||||||||||||||||||||| |||| |
|
|
T |
30368143 |
actaggtagtatatcagatttgattgcac |
30368115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 334
Target Start/End: Original strand, 13204416 - 13204723
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||| |||||| || | ||||||||||||||||| |||||||||||||||||||||||| || ||||||| |||| |||| | | |||| |||||| | |
|
|
T |
13204416 |
ctaagatctttacccaaacaacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctgtctctgatacccatctct |
13204515 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| || | ||| |||||||||||| |||| | | ||| |
|
|
T |
13204516 |
caggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctcc |
13204615 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
||||||||||||||| |||||||| ||||| | |||| ||| | | ||||||| | || || |||| ||||||||| |||||||||||||| || ||| |
|
|
T |
13204616 |
actaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagc |
13204715 |
T |
|
Q |
327 |
ttatcaag |
334 |
Q |
|
|
|||||||| |
|
|
T |
13204716 |
ttatcaag |
13204723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 27 - 334
Target Start/End: Complemental strand, 13070411 - 13070104
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||| |||||| || | ||||||||| ||||||| |||||||||||||||||||||||| || ||||||| |||| |||| | | |||| |||||| | |
|
|
T |
13070411 |
ctaagatctttacccaaacaacttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctct |
13070312 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| || | ||| |||||||||||| |||| | | ||| |
|
|
T |
13070311 |
caggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctcc |
13070212 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
||||||||||||||| |||||||| ||||| | |||| ||| | | ||||||| | || || |||||||||||||| |||||||||||||| || || |
|
|
T |
13070211 |
actaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactaga |
13070112 |
T |
|
Q |
327 |
ttatcaag |
334 |
Q |
|
|
|||||||| |
|
|
T |
13070111 |
ttatcaag |
13070104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 13007154 - 13007464
Alignment:
Q |
24 |
aagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatc |
123 |
Q |
|
|
||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| |||| |||||| | || | ||||| |
|
|
T |
13007154 |
aagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatc |
13007253 |
T |
|
Q |
124 |
tttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtg |
223 |
Q |
|
|
| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| || | ||| |||||||||||| |||| | | |
|
|
T |
13007254 |
tctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctc |
13007353 |
T |
|
Q |
224 |
tccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaaca |
323 |
Q |
|
|
|||||||||||||||||| || ||||| ||||| | |||| ||| | | ||||||| | ||||| | || |||||||| |||||||| ||||| || |
|
|
T |
13007354 |
tccactaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacact |
13007453 |
T |
|
Q |
324 |
agcttatcaag |
334 |
Q |
|
|
||||||||||| |
|
|
T |
13007454 |
agcttatcaag |
13007464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 13100955 - 13101264
Alignment:
Q |
24 |
aagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatc |
123 |
Q |
|
|
||||||||||| || || |||||||||||||| |||| |||||||||||||||||||||||| || ||||||| |||| |||||| | || | ||||| |
|
|
T |
13100955 |
aagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatc |
13101053 |
T |
|
Q |
124 |
tttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtg |
223 |
Q |
|
|
| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| || | ||| |||||||||||| || | | | |
|
|
T |
13101054 |
tctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaacgctc |
13101153 |
T |
|
Q |
224 |
tccactaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaaca |
323 |
Q |
|
|
||||||||| |||||||| |||||||| | ||| | |||| ||| | | ||||||| | ||||| |||||||||||||| |||||||| ||||| || |
|
|
T |
13101154 |
tccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacact |
13101253 |
T |
|
Q |
324 |
agcttatcaag |
334 |
Q |
|
|
||||||||||| |
|
|
T |
13101254 |
agcttatcaag |
13101264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 338 - 482
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
Q |
338 |
tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc |
437 |
Q |
|
|
|||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
T |
13244251 |
tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc |
13244152 |
T |
|
Q |
438 |
caagaagtggtgaagattttcttttgctgccttgcccttcatctc |
482 |
Q |
|
|
|||||| ||||||||||||||| | ||||||||||||||| |||| |
|
|
T |
13244151 |
caagaattggtgaagattttctctagctgccttgcccttcttctc |
13244107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 13065445 - 13065139
Alignment:
Q |
30 |
atatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcag |
129 |
Q |
|
|
|||||||| || | ||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||| ||| || ||||||||||| |||| |
|
|
T |
13065445 |
atatctttacccaaacaacttcttggccctgcattgaaagctatgaacttgtaagacggtacatgtataatttgtccgctttttgatatccatctctcag |
13065346 |
T |
|
Q |
130 |
gcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtccact |
229 |
Q |
|
|
|||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||| | |||| | | |||||||||||| |||||| |||||| |
|
|
T |
13065345 |
gcttaaattccatgcagtcttctccccatattttctccatccttcccattgaatacaaatagtataatatccttgtatttggacttacatggactccact |
13065246 |
T |
|
Q |
230 |
aggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagctta |
329 |
Q |
|
|
||| |||||||||| |||||| ||| |||| |||| | | | ||||||| | |||||||||| ||||||||| ||||| || ||||||| || ||| |
|
|
T |
13065245 |
aggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagttta |
13065146 |
T |
|
Q |
330 |
tcaagct |
336 |
Q |
|
|
||||||| |
|
|
T |
13065145 |
tcaagct |
13065139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 334
Target Start/End: Original strand, 13161478 - 13161785
Alignment:
Q |
27 |
ctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatcttt |
126 |
Q |
|
|
|||| |||||| || |||||| |||| || |||| ||||||| ||||||||||||||| || ||||||| ||| |||| || | ||||||||||| | |
|
|
T |
13161478 |
ctaagatctttacctatacaaattctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctct |
13161577 |
T |
|
Q |
127 |
caggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatggtgtcc |
226 |
Q |
|
|
||||||||||||||| ||| ||||| ||||||| |||||||||||| ||||| | ||||| ||| || || || |||||||||||| || | | | ||| |
|
|
T |
13161578 |
caggcttaaattccatgcagtcttccccccatagttgttccatcctgcccatagaatacatagagtacattaaacttgtatttggactaatacgttctcc |
13161677 |
T |
|
Q |
227 |
actaggtagtatatcagatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagc |
326 |
Q |
|
|
||||||||||||||| |||||||| ||||| | |||| ||| | | ||| ||| | |||||||||||||||||||| |||||||| ||||| || ||| |
|
|
T |
13161678 |
actaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13161777 |
T |
|
Q |
327 |
ttatcaag |
334 |
Q |
|
|
|||||||| |
|
|
T |
13161778 |
ttatcaag |
13161785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q |
338 |
tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc |
407 |
Q |
|
|
|||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || ||||| |
|
|
T |
12963644 |
tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc |
12963575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q |
345 |
ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc |
412 |
Q |
|
|
||||||||||| ||| |||||||||||||||| |||||||||| |||||||||| | |||||||||| |
|
|
T |
19278894 |
ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc |
19278827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 13895938 - 13895999
Alignment:
Q |
119 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattg |
180 |
Q |
|
|
||||||||| ||||| || ||||||||||||| ||||||||| | |||||| |||||||||| |
|
|
T |
13895938 |
ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattg |
13895999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 482
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
Q |
403 |
tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc |
482 |
Q |
|
|
||||||| |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || |||||||| |||| |
|
|
T |
19278809 |
tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc |
19278730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 13888766 - 13888705
Alignment:
Q |
119 |
ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattg |
180 |
Q |
|
|
||||||||| ||||| || ||||||||||||| ||||||||| |||||| |||||||||| |
|
|
T |
13888766 |
ccatctttctggcttgaactccaagcaatcttttccccatatgctttccattcttcccattg |
13888705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 341942 - 341825
Alignment:
Q |
74 |
gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatcctt |
173 |
Q |
|
|
||||||||||||||| ||| |||||||||||||| | || ||||| || || |||||||| ||||||||||||| |||||| || | ||| |||| |
|
|
T |
341942 |
gaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaactccaagcaatcttttccccaaatattttcatccctt |
341843 |
T |
|
Q |
174 |
cccattgcatacaaagaa |
191 |
Q |
|
|
|||||||||||||||||| |
|
|
T |
341842 |
cccattgcatacaaagaa |
341825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 377658 - 377541
Alignment:
Q |
74 |
gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatcctt |
173 |
Q |
|
|
|||||| |||||||| |||| ||||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||||| | ||| | || |
|
|
T |
377658 |
gaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctc |
377559 |
T |
|
Q |
174 |
cccattgcatacaaagaa |
191 |
Q |
|
|
||||||| |||||||||| |
|
|
T |
377558 |
cccattgaatacaaagaa |
377541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 346845 - 346930
Alignment:
Q |
75 |
aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat |
160 |
Q |
|
|
||||||||||| || ||| |||||||||||||| | ||||||||||| || ||||| || ||||| ||||||| ||||||||| |
|
|
T |
346845 |
aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat |
346930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 355504 - 355589
Alignment:
Q |
75 |
aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat |
160 |
Q |
|
|
||||||||||| || ||| |||||||||||||| | ||||||||||| || ||||| || ||||| ||||||| ||||||||| |
|
|
T |
355504 |
aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat |
355589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 337882 - 337787
Alignment:
Q |
96 |
acaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccat-ccttcccattgcatacaaagaa |
191 |
Q |
|
|
|||||||||||||| | || ||||| || || ||||| || |||||||||||||||||||| || | || ||| ||||||||||| |||||||||| |
|
|
T |
337882 |
acaatgcctcctctctcagaaatccacctctctggcttgaactccaagcaatcttctccccaaatat-ttgcatcccttcccattgaatacaaagaa |
337787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 12164263 - 12164365
Alignment:
Q |
60 |
gcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccata |
159 |
Q |
|
|
||||| ||||| |||||||||||||| || |||| || || |||||| | || ||||| || || ||||||||||||||||||||||||||||||| |
|
|
T |
12164263 |
gcattaaaagcaatgaacttgtaagaaggaacataaactatccctcctttttgagaaatccacctctctggcttaaattccaagcaatcttctccccata |
12164362 |
T |
|
Q |
160 |
ttt |
162 |
Q |
|
|
||| |
|
|
T |
12164363 |
ttt |
12164365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 36668187 - 36668235
Alignment:
Q |
132 |
ttaaattccaagcaatcttctccccatatttgttccatccttcccattg |
180 |
Q |
|
|
||||||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
T |
36668187 |
ttaaattccaagcaatcttctccccatatttcctccacccttccaattg |
36668235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 29669336 - 29669296
Alignment:
Q |
132 |
ttaaattccaagcaatcttctccccatatttgttccatcct |
172 |
Q |
|
|
|||||||||||||||||||| |||||||||| |||||||| |
|
|
T |
29669336 |
ttaaattccaagcaatcttccccccatattttctccatcct |
29669296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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