View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_15 (Length: 475)
Name: NF1711_high_15
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 54106815 - 54107283
Alignment:
| Q |
1 |
ctacgaaacaattgactttttaagtataacaatgtggaagtatacatttgttgttgtgtcgatatttcactgagtcttggcggtacttgttttggtgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54106815 |
ctacgaaacaattgactttttaagtataacaatgagggagtatacatttgttgttgtgtcgatatttcactaagtcttggcggtacttgttttggtgttg |
54106914 |
T |
|
| Q |
101 |
atatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttcatcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54106915 |
atatttgattggtttgttatgtttgtcaagtaggaatgacactaagcaatcatatcccattatttcggttacacttttccaccactcactttcatcaatg |
54107014 |
T |
|
| Q |
201 |
attgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaagt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54107015 |
attgttaatgcatgaataaatgagttcattggtgttgatatttgttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaagt |
54107114 |
T |
|
| Q |
301 |
aaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54107115 |
aaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaacaa |
54107214 |
T |
|
| Q |
401 |
aatact-attattagcaaaaatacgtaagaaatttgtaggtcctgttgccactttctcatttcttctct |
468 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
54107215 |
aatactaattattagcaaaaatacgtaagaaacttgtaggtcctgttgccactttctcatttcttctct |
54107283 |
T |
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