View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_16 (Length: 463)
Name: NF1711_high_16
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 45923417 - 45922979
Alignment:
Q |
1 |
taattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
45923417 |
taattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagt |
45923318 |
T |
|
Q |
101 |
ctcttttgaactggtcacaggagactcataaaaatgatacaagattttcagtacaaacaatgcgaagcatccctgggaaaaaattatcgaccaaccaaag |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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T |
45923317 |
ctcttttgaactggtcacaggagactca--aaaatgatacaagattttcagtacaaacaatgcgaagcatccctggtaaaaaattatcgaccaaccaaag |
45923220 |
T |
|
Q |
201 |
ggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattatttttcatcatggaaaagnnnnnnnngtcc |
300 |
Q |
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T |
45923219 |
ggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagttttttttgtcc |
45923120 |
T |
|
Q |
301 |
attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattannnnnnngctttatcttccactacatttctcttctctctccaccataa |
400 |
Q |
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T |
45923119 |
attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattatttttttgctttatcttccactacatttctcttctctctccaccataa |
45923020 |
T |
|
Q |
401 |
aagctgaaatcccttttctatagctgaagttgttaaatcca |
441 |
Q |
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T |
45923019 |
aagcttaaatcccttttctatagctgaagttgttaaatcca |
45922979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 45922293 - 45922344
Alignment:
Q |
301 |
attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
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T |
45922293 |
attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
45922344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 42607137 - 42607192
Alignment:
Q |
297 |
gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
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T |
42607137 |
gtccattagatcaaatgagaaacacaatcttatcatgatctatcaacacttgatta |
42607192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 44541047 - 44541099
Alignment:
Q |
300 |
cattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
|
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
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T |
44541047 |
cattagatcaaataagaaacacaatcttatcatggcctatcaacacttaatta |
44541099 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 40257636 - 40257691
Alignment:
Q |
297 |
gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
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||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
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T |
40257636 |
gtccattagatcaaatgagaaacacattcttatcatgatctatcaacacttgatta |
40257691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 6730150 - 6730095
Alignment:
Q |
297 |
gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||| |
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T |
6730150 |
gtccattggatcaaatgagaaacacaatcttatcatggtctataaacatttgatta |
6730095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 6729462 - 6729509
Alignment:
Q |
305 |
gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||| |||| |
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T |
6729462 |
gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta |
6729509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 36845250 - 36845203
Alignment:
Q |
241 |
ggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag |
288 |
Q |
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T |
36845250 |
ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaag |
36845203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 40257794 - 40257747
Alignment:
Q |
297 |
gtccattagatcaaacaagaaacacaatcttatcatggtctatcaaca |
344 |
Q |
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||||||||||||||| ||||||||| |||||||||| |||||||||| |
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T |
40257794 |
gtccattagatcaaatgagaaacacattcttatcatgatctatcaaca |
40257747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 42607797 - 42607750
Alignment:
Q |
305 |
gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
|
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||||||| ||||||||||||||||||| |||||||||||||||||| |
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T |
42607797 |
gatcaaatgagaaacacaatcttatcataatctatcaacacttgatta |
42607750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 35943132 - 35943187
Alignment:
Q |
297 |
gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
|
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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T |
35943132 |
gtccattgaatcaaatgagaaacacaatcttatcatggtctatcaacacttgatta |
35943187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 35943823 - 35943776
Alignment:
Q |
305 |
gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta |
352 |
Q |
|
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||||||| |||||||||||||||||||||| ||||||||||| |||| |
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T |
35943823 |
gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta |
35943776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 28030249 - 28030297
Alignment:
Q |
240 |
gggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag |
288 |
Q |
|
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|||||||||||||||||||| ||| ||| |||||||||| |||| |||| |
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|
T |
28030249 |
gggtgaggtttagcatgggaaaggaaaaatatttttcatgatgggaaag |
28030297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 38739912 - 38739880
Alignment:
Q |
237 |
ttggggtgaggtttagcatgggatagggaaatt |
269 |
Q |
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||||||||||||||||||||||| ||||||||| |
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T |
38739912 |
ttggggtgaggtttagcatgggaaagggaaatt |
38739880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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