View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_17 (Length: 456)
Name: NF1711_high_17
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 1741689 - 1741262
Alignment:
| Q |
15 |
gacaccaatgagaatttgaaaaaacggaattattgaattcaaacacatgtgtcagtatcgtgttgatgtcagacaccggacacaccttcaacctgaggtt |
114 |
Q |
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| T |
1741689 |
gacaccaatgagaatttgaaaaaacggaattattgaattcaaacacatgtgtcagtattgtgttgatgtcagacatcggacacaacgtcaacctgaggtt |
1741590 |
T |
|
| Q |
115 |
tcaatgctacaaagcaactattaagcttgactct-aaagtactccatcgaacaacattacttgcaatttttccttcgttgttctcttgactcaacgattt |
213 |
Q |
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| T |
1741589 |
ttgaagctacaaagcaactattaaacttgacactgaaagtactccatcgagcaacattacttgcaatttttccttcgtttttctcttgactcaacgattt |
1741490 |
T |
|
| Q |
214 |
ctctgatacaactattgatatctcacaagaatttccttaacagatgatctcctcactaattaatgacttctttatttttctgttaataacaatttctctt |
313 |
Q |
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| T |
1741489 |
ctctgatacaattattgttatctcacaagaacttccttaaaagatgatctcctcactaattaatgacttctttatttttctgttaagaacaatttctctt |
1741390 |
T |
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| Q |
314 |
atctttcacatttcttacatatttcatgtatatcttgatattactaatattactgataatatttaaatttagagattgatttagaaactgaagcttactt |
413 |
Q |
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| T |
1741389 |
atcattcacatttcttacatatttcatgtatatcttgatattattaatattacggataatatttaaatttagaggttgatttagaaactgaagcttactt |
1741290 |
T |
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| Q |
414 |
cgtagggtacctgtagttgggatatata |
441 |
Q |
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| T |
1741289 |
cgtagggtacttgtagttgggatatata |
1741262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 2008895 - 2008974
Alignment:
| Q |
317 |
tttcacatttcttacatatttcatgtatatcttgatattactaatattactgataatatttaaatttagagattgattta |
396 |
Q |
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| T |
2008895 |
tttcacatttcttgcatatttcatatatatcttgatattattaatatgactgaaaatatttaaatttagagcttgattta |
2008974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Original strand, 2008994 - 2009033
Alignment:
| Q |
402 |
tgaagcttacttcgtagggtacctgtagttgggatatata |
441 |
Q |
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| T |
2008994 |
tgaagcttacttcgtagggtacttgtagtttggatatata |
2009033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 30711709 - 30711667
Alignment:
| Q |
80 |
atgtcagacac-cggacacaccttcaacctgaggtttcaatgc |
121 |
Q |
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| T |
30711709 |
atgtcagacactcggacacgccttcaacctgaggtttcaatgc |
30711667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 441
Target Start/End: Original strand, 26221192 - 26221319
Alignment:
| Q |
328 |
ttacatatttcatgtatatcttgatattactaatattactgataatatttaaatttagagattgattta--------------gaaactgaagcttactt |
413 |
Q |
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||||||||||| | || ||||| |||||| |||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| |
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| T |
26221192 |
ttacatatttcttatacatcttaatattattaatattactgataatatttaaatttagaggttggtttatggctactactttagaaaatgaagcttactt |
26221291 |
T |
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| Q |
414 |
cgtagggtacctgtagttgggatatata |
441 |
Q |
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| T |
26221292 |
cgtagggtacttgtagtttggatatata |
26221319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 16567338 - 16567382
Alignment:
| Q |
58 |
cacatgtgtcagtatcgtgttgatgtcagacaccggacacacctt |
102 |
Q |
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| T |
16567338 |
cacatgtgtcagtatcgtgttggtgtcaaacaccggacacacctt |
16567382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 9381378 - 9381345
Alignment:
| Q |
58 |
cacatgtgtcagtatcgtgttgatgtcagacacc |
91 |
Q |
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| T |
9381378 |
cacatgtgtcagtatcgtgttgatatcagacacc |
9381345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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