View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_20 (Length: 440)
Name: NF1711_high_20
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 28343342 - 28343753
Alignment:
| Q |
9 |
gaagcataggtgaagatagccatggatggaaggtagagaaggaattgaagcaaacaatgatggtgttgttgtcaaagtttagctcaactatatgcaacgt |
108 |
Q |
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| T |
28343342 |
gaagcataggtgaagatagccatggatggaaggtagagaaggaattgaagcaaacaatgatggtgttgttgtcaaagtttagctcaactatatgcaacgt |
28343441 |
T |
|
| Q |
109 |
tgagttcaatgctttattaattaaattgatttaattaaaagtagtgacattagcatatttattaataaatgttctcagtatagttggtaattaattggaa |
208 |
Q |
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| T |
28343442 |
tgagttcaatgctttattaattaaattgatttaattaaaagtagtgacattagcatatttattaataaatgttctcagtatagttggtaattaattggaa |
28343541 |
T |
|
| Q |
209 |
caaaatacaaatggaagagtctcaataattggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaa |
308 |
Q |
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| T |
28343542 |
caaaatacaaatggaagagtctcaataattggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaa |
28343641 |
T |
|
| Q |
309 |
tagtttataatatgtctaaagttggacatactctatagtaacataagtatttacaaaatgttttagttaaacttataaaactattttatgttaagtgatg |
408 |
Q |
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| T |
28343642 |
tagtttataatatgtataaagttggacatactctatagtaacataagtatttacaaaatgttttagttaaacttataaaactattttatgttaagtgatg |
28343741 |
T |
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| Q |
409 |
tgaccaagtaga |
420 |
Q |
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|||||||||||| |
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| T |
28343742 |
tgaccaagtaga |
28343753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 236 - 398
Target Start/End: Original strand, 28336467 - 28336633
Alignment:
| Q |
236 |
attggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaatagtttataatatgtctaaagttggac |
335 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |
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| T |
28336467 |
attggtactgtatttggacttattctagtataacataggtatctacaaaggtgtttagaaaaccttataaaaatagtttataatatgtct--atttggac |
28336564 |
T |
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| Q |
336 |
atactctat-------agtaacataagtatttacaaaatgttttagttaaacttataaaactattttatg |
398 |
Q |
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| T |
28336565 |
agactctatagtctagagtaacataagtacttacaaaatg-tttaggtaaatttataaaactattttatg |
28336633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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