View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_23 (Length: 412)
Name: NF1711_high_23
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 33509711 - 33509558
Alignment:
| Q |
91 |
aagtgagattacttctgagtttaaattttcattaaataatcacttattacataagagattaaatataacttgtgtcgataagctatattaagaagagctt |
190 |
Q |
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| T |
33509711 |
aagtgagattacttctgaatttaaattttcattaaataatcacttattacataagagattatatataacttgtgtcgataagctatattaagaagagctt |
33509612 |
T |
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| Q |
191 |
atagaaataacttagagaaaagcttgtagacatatt-aaaagttgttttgataa |
243 |
Q |
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| T |
33509611 |
atagaaataacttagagaaaagcttgtagacatattaaaaagttgttttgataa |
33509558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 240 - 401
Target Start/End: Complemental strand, 33509482 - 33509323
Alignment:
| Q |
240 |
ataaatgaggctccgttagtacgtggagaaaacaaaggaaaatggtcgtcggataggatttttaattccatttgagaaaagagagatctaaatattttaa |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33509482 |
ataaatgaggctccgttagtacgtggagaaaacaaaggaaaatggttgttggataggatttttaattccatttgagaaaagagagatctaaatattttaa |
33509383 |
T |
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| Q |
340 |
ggattttaaattaataaaatcannnnnnnnnaaaaggtcaaatgattccattttcaattcat |
401 |
Q |
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| T |
33509382 |
ggattttaaattaataaaatca--tttttttaaaaggtcaaatgattccattttcaattcat |
33509323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 33509762 - 33509710
Alignment:
| Q |
16 |
ataacattgcttgatatactatatcttt--atattgggattaagtcatgacaa |
66 |
Q |
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| T |
33509762 |
ataacattgcttgatatactatatctttatatattgggattaagtcatgacaa |
33509710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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