View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_25 (Length: 395)

Name: NF1711_high_25
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_25
NF1711_high_25
[»] chr1 (2 HSPs)
chr1 (18-383)||(9788674-9789039)
chr1 (258-368)||(16769140-16769250)
[»] chr5 (1 HSPs)
chr5 (249-377)||(30303209-30303337)
[»] chr2 (2 HSPs)
chr2 (249-377)||(28591595-28591723)
chr2 (250-382)||(34072969-34073101)
[»] chr3 (1 HSPs)
chr3 (307-383)||(26392007-26392083)
[»] chr8 (2 HSPs)
chr8 (249-377)||(26953082-26953210)
chr8 (249-298)||(21277988-21278037)
[»] chr4 (1 HSPs)
chr4 (249-377)||(23060984-23061112)
[»] chr7 (1 HSPs)
chr7 (91-179)||(21116983-21117071)
[»] chr6 (1 HSPs)
chr6 (249-369)||(25905986-25906106)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 9788674 - 9789039
Alignment:
Q  18 aacccatctttgagccaaggtgcacctaggacatgtatgttagcgccaaagcctagaaagctagaaagatcagtttgaaagattcatccctgtttcccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788674 aacccatctttgagccaaggtgcacctaggacatgtatgttagcgccaaagcctagaaagctagaaagatcagtttgaaagattcatccctgtttcccaa 9788773  T
Q  118 gaatagccacattaaagaaagtaaggtatttaaatcccattccttcataatttttatgaacatacagtttttcccatgttgtttcatatattctctataa 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788774 gaatagccacattaaagaaagtaaggtctttaaatcccattccttcataatttttatgaacatacagtttttcccatgttgtttcatatattctctataa 9788873  T
Q  218 cataaattgatttggtgggaagccagaacacgctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788874 cataaattgatttggtgggaagccagaacacgctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatag 9788973  T
Q  318 acagttgctactctaagggttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc 383  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788974 acagtttctactctaagtgttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc 9789039  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 16769140 - 16769250
Alignment:
Q  258 atatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgccaaattcga 357  Q
    |||||||| ||| ||||| |  || ||||||||||||||||  | |  |||||| |||||||| ||||||||||||| ||| | ||| ||||| |||| |    
T  16769140 atatgatgagattgattgaatgacctatttgatcattacctcacgtttagctttggatagacatttgctactctaagagttgactttctgccatattcta 16769239  T
Q  358 tccttgataaa 368  Q
    |||||||||||    
T  16769240 tccttgataaa 16769250  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 30303337 - 30303209
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc 348  Q
    |||||| ||||| |||||||| ||||| || ||  ||||||||||||||| ||  |||||||| || | ||| || |||||| ||  ||||||||| |||    
T  30303337 gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgc 30303238  T
Q  349 caaattcgatccttgataaaaccgaaagt 377  Q
    ||||| || |||||||||||||| |||||    
T  30303237 caaatacggtccttgataaaaccaaaagt 30303209  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 28591595 - 28591723
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc 348  Q
    |||||| ||||| |||||||| ||||| || ||  ||||||||||||||| ||  |||||||| || | ||| || |||||| ||  ||||||||| |||    
T  28591595 gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaactgttaattttgtgc 28591694  T
Q  349 caaattcgatccttgataaaaccgaaagt 377  Q
    ||||| || |||||||||||||| |||||    
T  28591695 caaatacggtccttgataaaaccaaaagt 28591723  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 34072969 - 34073101
Alignment:
Q  250 ctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgcc 349  Q
    ||||||| ||||||||| |||| ||| ||||| ||||||||||| |||| ||| || ||||| || | ||| || |||||| ||  | ||||||| ||||    
T  34072969 ctcatgacatatgatggaatagcttgaagaacatatttgatcatgacctctctacctgctttggacaaacatttactactccaactgctaattttttgcc 34073068  T
Q  350 aaattcgatccttgataaaaccgaaagttgctt 382  Q
    | | ||  ||||||||||||| |||||||||||    
T  34073069 acactctgtccttgataaaactgaaagttgctt 34073101  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 26392007 - 26392083
Alignment:
Q  307 gcttttgatagacagttgctactctaagggttaattttatgccaaattcgatccttgataaaaccgaaagttgcttc 383  Q
    ||||| |||||||| ||||||||| |||  |||||||| |||||||| |||||||||||||| || ||||| |||||    
T  26392007 gctttagatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttc 26392083  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 26953082 - 26953210
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc 348  Q
    |||||| ||||| |||||||| ||||| || ||  ||||||||||||||| ||  |||||||| || | ||| ||  ||||| ||  ||||||||| |||    
T  26953082 gctcataatataagatgggattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttattactccaactgttaattttgtgc 26953181  T
Q  349 caaattcgatccttgataaaaccgaaagt 377  Q
    |||||  | |||||||||||||| |||||    
T  26953182 caaatatggtccttgataaaaccaaaagt 26953210  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 21277988 - 21278037
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacct 298  Q
    |||||| ||||| ||||||||||||||||| ||  |||||||||||||||    
T  21277988 gctcataatataagatgggatagattggagtaccgatttgatcattacct 21278037  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 23060984 - 23061112
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc 348  Q
    |||||| ||||| |||||||| ||||| |  ||  ||||||||||||||| ||  ||| |||| || | ||| || |||||| ||  ||||||||| |||    
T  23060984 gctcataatataagatgggattgattgtaataccgatttgatcattacctctcgaccaactttggacaaacacttactactccaactgttaattttgtgc 23061083  T
Q  349 caaattcgatccttgataaaaccgaaagt 377  Q
    ||||| || |||||||||||||| |||||    
T  23061084 caaatacggtccttgataaaaccaaaagt 23061112  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 21117071 - 21116983
Alignment:
Q  91 tttgaaagattcatccctgtttcccaagaatagccacattaaagaaagtaaggtatttaaatcccattccttcataatttttatgaaca 179  Q
    |||||||  ||||||||||||| ||||| || || ||||||||  | || || | |||||| ||||||||  |||||||||||||||||    
T  21117071 tttgaaattttcatccctgtttaccaagcattgctacattaaaagatgtgagatctttaaaccccattccaccataatttttatgaaca 21116983  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 25905986 - 25906106
Alignment:
Q  249 gctcatgatatatgatgggatagattggagaacttatttgatcattacctttcttccagcttttgatagacagttgctactctaagggttaattttatgc 348  Q
    |||||| ||||| |||| ||| ||||| || ||  ||||||||||||||| ||  |||||||| || | ||| || |||||| ||  ||||||||| | |    
T  25905986 gctcataatataagatgagattgattgtagtaccgatttgatcattacctctcgaccagctttggacaaacacttactactccaattgttaattttgtac 25906085  T
Q  349 caaattcgatccttgataaaa 369  Q
    ||||| || ||||||||||||    
T  25906086 caaatacggtccttgataaaa 25906106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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