View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_3 (Length: 618)
Name: NF1711_high_3
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 2 - 602
Target Start/End: Original strand, 31776953 - 31777552
Alignment:
| Q |
2 |
cataggaagctaacttatctttctaaagattcacatttcctattcattttgtatcttagatttcttaaaatgatatagaagattaatgaataatttaata |
101 |
Q |
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| T |
31776953 |
cataggaagctaacttatctttctaaagattcacatttcctattcattttgtatcttagatttcttaaaatgatatagaagattaatgaataatttaata |
31777052 |
T |
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| Q |
102 |
agaatatggaaaatggtttgtataccagcaacagtagagttgttccttgtctgaaaagaaacttgagaatctggtgaagatgaaggaggcacatgcgttt |
201 |
Q |
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| T |
31777053 |
agaatatggaaaatggtttgtataccagcaacagtagagttgttccttgtctgaaaagaaacttgagaatctggtgaagatgaaggaggcacatgcattt |
31777152 |
T |
|
| Q |
202 |
tcacacctgacaaaaatagaggaaaatcagttttttgtgtgaaagaatcactttttcaaaaaataatcagttttacatttttatacatgtccctaagtat |
301 |
Q |
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| T |
31777153 |
tcacacctgacaaaaatagaggaaaatcagttttttgtgtgaaagaatcactttttcaaaaaataatcagttttacatttttatacatgtcc-taagtat |
31777251 |
T |
|
| Q |
302 |
gctaataataaaattgaatataagaattaaaaactgatagcattagaagtaagagttagaaacaagtctaggactcatggtttgaatgtaataatatatt |
401 |
Q |
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| T |
31777252 |
gctaataataaaattgaatataagaattaaaaactgatagcattagaagtaagagttagaaacaagcctaggactcatggtttgaatgtaataatatatt |
31777351 |
T |
|
| Q |
402 |
gcaactaaattatatataatctttagttatatctgaaggttaaatgtgattgattatgtgacctggacaaactgaattatcaacatgaaggttacaaaga |
501 |
Q |
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| T |
31777352 |
gcaactaaattatatataatctttagttatatctgaaggttaaatgtgattgattatgtgacctggacaaactgaattatcaacatgaaggttacaaaaa |
31777451 |
T |
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| Q |
502 |
gttgggatctgtagagcaagtgtcctattgatggggaaagaggtaaaagtagtgttgttaaacaagaagcaaagacagtgtggctcttggctatagagtt |
601 |
Q |
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| T |
31777452 |
gttgggatctgtagagcaagtgtcctattgatggggaaagaggtaaaagtagtgttgttaaacaagaagcaaagacagtgtggctcttggctatagagtt |
31777551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 486 - 569
Target Start/End: Original strand, 31782594 - 31782677
Alignment:
| Q |
486 |
atgaaggttacaaagagttgggatctgtagagcaagtgtcctattgatggggaaagaggtaaaagtagtgttgttaaacaagaa |
569 |
Q |
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| T |
31782594 |
atgaaggttacaaagaggtgggatatgcaaagcaaatgtcctattgacggggaaagaggtaaaaacagtgtcattaaacaagaa |
31782677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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