View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_33 (Length: 367)
Name: NF1711_high_33
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 41020250 - 41020413
Alignment:
Q |
194 |
tggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctaga |
293 |
Q |
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T |
41020250 |
tggtatttgaccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctagg |
41020349 |
T |
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Q |
294 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
357 |
Q |
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T |
41020350 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
41020413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 22876979 - 22877073
Alignment:
Q |
193 |
gtggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
287 |
Q |
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T |
22876979 |
gtggtatttagccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
22877073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 41020075 - 41020171
Alignment:
Q |
18 |
catcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
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T |
41020075 |
catcttttgttacataaatgatttttaaaagattaa-tttgggatccaaatatgttattttagtttgaaacttaaagaattaacttagaaattctgtc |
41020171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 22876805 - 22876901
Alignment:
Q |
18 |
catcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
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T |
22876805 |
catcttttgttacattaatgatttttaaaggactaacttggg-acccaaatatgtcattttagtttgaaacttaaaggattaacttgagaattctgtc |
22876901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 11113712 - 11113763
Alignment:
Q |
64 |
caaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
115 |
Q |
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T |
11113712 |
caaatatgtcattttagtttgaaacttaaaagactagtttgggaattttgtc |
11113763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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