View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_34 (Length: 366)
Name: NF1711_high_34
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 7295279 - 7295631
Alignment:
Q |
1 |
aatctcagttgtgataacaatagacctgtgtatgtatggagtaattttgagttgtagttggggagtgttttggtggttaagaaagtgtagcttaatttga |
100 |
Q |
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T |
7295279 |
aatctcagttgtgataacaatagacctgtgtatgtatggagtaattttgagttgtagttggggagtgttttggtggttaagaaagtgtagcttaatttga |
7295378 |
T |
|
Q |
101 |
agttgacgacaatgtggtcataatatatggctatctgcataattatgcaggtgggtggtggatactgataagtaggaattgatgccttgttaataccttt |
200 |
Q |
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T |
7295379 |
agttgacgacaatgtggtcataatatatggctatctgcataattatgcaggtgggtggtggatactgat-agtaggaattgatgccttgttaataccttt |
7295477 |
T |
|
Q |
201 |
tgaatatcctccctccctttgactcaccaccctgcaaatctctactattttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaa |
300 |
Q |
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T |
7295478 |
tgaatatcctccctccctttgactcaccaccctgcaaatctctactattttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaa |
7295577 |
T |
|
Q |
301 |
gcaacta---aagaagtgtctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
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T |
7295578 |
gcaactaaagaagaagtgtctctcccggctaatatgaaattcaaacatatatcc |
7295631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 13887755 - 13887633
Alignment:
Q |
212 |
cctccctttgactcaccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaa |
308 |
Q |
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T |
13887755 |
cctccctttgactcacaaccctgcaaatctcttctaatattttctcctccacttcatgattctgattaagtaaccagaaaaaccagcttaaagcaactga |
13887656 |
T |
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Q |
309 |
agaagtgtctctcccggctaata |
331 |
Q |
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T |
13887655 |
agaagtgtctctcccagctaata |
13887633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 13897455 - 13897597
Alignment:
Q |
212 |
cctccctttgactcaccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaa |
308 |
Q |
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|||||||||||| ||| ||||||||||||||| ||| |||| ||||| | ||||| ||| ||||||| ||||||||||| || || ||||||||| | |
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T |
13897455 |
cctccctttgacacacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagcttaaagcaactga |
13897554 |
T |
|
Q |
309 |
agaagtgtctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
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T |
13897555 |
agaagtgtctctcccagctaatatgaaatttacacaaatatcc |
13897597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 1034525 - 1034634
Alignment:
Q |
225 |
caccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaaagaagtgtctctc |
321 |
Q |
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||||||||||||||| ||| ||| |||| ||||| | ||||| ||| ||||||| ||||||||||| || |||||||||||| |||||||||||||| |
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T |
1034525 |
caccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctc |
1034624 |
T |
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Q |
322 |
ccggctaata |
331 |
Q |
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T |
1034625 |
ccagctaata |
1034634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 28666800 - 28666934
Alignment:
Q |
220 |
tgactcaccaccctgcaaatctctactatt---ttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaaagaagtgt |
316 |
Q |
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|||||||||||| |||| |||||| ||| | || ||||||| ||||| ||| |||||||| ||||| |||| || |||||||| || ||||||||| |
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T |
28666800 |
tgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaagtgt |
28666899 |
T |
|
Q |
317 |
ctctcccggctaatacgaaattcaaacatatatcc |
351 |
Q |
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||||||| |||| || ||||||| |||||||||| |
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T |
28666900 |
ctctcccagctagtataaaattcacacatatatcc |
28666934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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