View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_35 (Length: 355)
Name: NF1711_high_35
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 53274026 - 53274363
Alignment:
| Q |
1 |
tgcaagcaataaatgagtgaaaaaattaagctgaaaagaaaagggagggaagaaagagtgagcatttgcaag---tagctaaacttattcttcaatgtgt |
97 |
Q |
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| T |
53274026 |
tgcaagcaataaatgagtgaaaaaattcagctgaaaag-----ggagggaagaaagagtgagcatttgcaagaagtagctagacttattcttcaatgtgt |
53274120 |
T |
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| Q |
98 |
accttgatgatttgtttcttcatattattgggagttgtttcttacacaactaaggctagtttggcaacactagagcttccaccaaatgtttcatttccag |
197 |
Q |
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| T |
53274121 |
accttaatgatttatttcttcatattattgggagttgtttcttacacaactaaggctagtttggcaacaatagagcttccaccaaatgtttcatttccag |
53274220 |
T |
|
| Q |
198 |
cagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgcaattttcttccatatggtaaagattt |
297 |
Q |
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| T |
53274221 |
cagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgcaattttcttccatatggtaaagattt |
53274320 |
T |
|
| Q |
298 |
caatggaggcatccctactggtcggttttgcaatggaaaagtt |
340 |
Q |
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| T |
53274321 |
caatggaggcatccctactggtcggttttgcaatggaaaagtt |
53274363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 8231001 - 8231068
Alignment:
| Q |
173 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatacgggcaacaa |
240 |
Q |
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| T |
8231001 |
cttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaa |
8231068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 8252582 - 8252637
Alignment:
| Q |
176 |
ccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
231 |
Q |
| |
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| T |
8252582 |
ccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatac |
8252637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 8270152 - 8270210
Alignment:
| Q |
173 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
231 |
Q |
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| T |
8270152 |
cttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatac |
8270210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 8242622 - 8242661
Alignment:
| Q |
192 |
ttccagcagtatttgtgtttggagattcaatcatggatac |
231 |
Q |
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| T |
8242622 |
ttccagcagtgtttgtgtttggagattcaatcatggatac |
8242661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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