View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_36 (Length: 352)

Name: NF1711_high_36
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_36
NF1711_high_36
[»] chr2 (1 HSPs)
chr2 (1-336)||(30677839-30678174)
[»] chr1 (5 HSPs)
chr1 (11-293)||(13179083-13179365)
chr1 (18-328)||(13166903-13167213)
chr1 (12-328)||(13150798-13151114)
chr1 (42-336)||(44313617-44313908)
chr1 (19-157)||(30930608-30930746)
[»] chr8 (2 HSPs)
chr8 (57-331)||(33212659-33212933)
chr8 (261-336)||(28416820-28416895)
[»] chr7 (1 HSPs)
chr7 (11-229)||(18892327-18892545)
[»] chr6 (3 HSPs)
chr6 (57-247)||(16322491-16322681)
chr6 (57-247)||(16334639-16334829)
chr6 (165-336)||(6339408-6339578)
[»] chr4 (1 HSPs)
chr4 (21-232)||(34215545-34215756)
[»] chr3 (1 HSPs)
chr3 (93-190)||(49498499-49498596)
[»] chr5 (1 HSPs)
chr5 (243-289)||(28792445-28792491)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 30678174 - 30677839
Alignment:
Q  1 atgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678174 atgcgtagttagaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttc 30678075  T
Q  101 tcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacct 200  Q
    | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678074 ttaccttcaccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacct 30677975  T
Q  201 actagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtc 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30677974 acgagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtc 30677875  T
Q  301 cgtttgctatccaagtatggcgcttgtcgggacttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  30677874 cgtttgctatccaagtatggcgcttgtcgggacttt 30677839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 13179365 - 13179083
Alignment:
Q  11 agaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgc 110  Q
    |||||| || ||||||||||  ||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||  | ||||||||||| ||||||    
T  13179365 agaccgttttatttggaaggcagaaaagcatgggaaatattctacgaagagtgcttatcgtttgtgtgtcgaggaacttatagattcttctcaccttcgc 13179266  T
Q  111 cgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatcc 210  Q
    || ||||  ||||||||||| |||| |||||| ||| ||||||||||||||||||||||||  ||||||||||  ||||||||||||||||| || || |    
T  13179265 cgccccgaaaattggtccggcatttagaagctaaaattacctcctaaggttcaaaacttagaatggaggatgttcaggggttgtttacctacgaggattc 13179166  T
Q  211 gacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattcttt 293  Q
    |||||||||||||||||||  ||||||||  | |||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  13179165 gacttcatgacaaaggtgtatagtgccctacgaattgcgttagttgtgtttccactcatgaggatctgacacatttattcttt 13179083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 13167213 - 13166903
Alignment:
Q  18 ttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccg 117  Q
    |||||||||||||  ||||||||||||||||||| |   |||| |||||||||||| ||||||||||||||  | ||||||||||| |||||||| || |    
T  13167213 ttgatttggaaggcagaaaagcatgggaaatattctccgaagattgcttatcgtttgtgtgtcgaggaacttatagattcttctcaccttcgccgcccag 13167114  T
Q  118 gtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttca 217  Q
    | |||||| |||| |||| |||| | ||| ||||||||||||||||||||||||  | ||||||||| | ||||||||||||||| || || ||||||||    
T  13167113 gaaattggcccggcatttagaagttaaaattacctcctaaggttcaaaacttagaatcgaggatgtgcaagggttgtttacctacgaggattcgacttca 13167014  T
Q  218 tgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtccgtttgctatccaagta 317  Q
    | |||||||||| |||||||||    |||||||||| |||||||||||||||||||||||| | |||||||||||| | |  ||  || |||||||||||    
T  13167013 taacaaaggtgtacagtgccctacaaattgcgttagttgtgtttccactcatgaggatctgacacatttattctttgcgtacccaatttctatccaagta 13166914  T
Q  318 tggcgcttgtc 328  Q
    ||||| |||||    
T  13166913 tggcggttgtc 13166903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 13151114 - 13150798
Alignment:
Q  12 gaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgcc 111  Q
    ||||| |||||||||||||  ||||||||||||||||||| |   |||| |||||||||||| ||||||||||||||  | ||||||||||| |||||||    
T  13151114 gaccgtttgatttggaaggcagaaaagcatgggaaatattctccgaagattgcttatcgtttgtgtgtcgaggaacttatagattcttctcaccttcgcc 13151015  T
Q  112 gtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccg 211  Q
    | || || ||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||  | ||||||||| ||||||||||||||||| || || ||    
T  13151014 gcccgggaaattggtacggcatttagaagctaaaattacctcctaaggttcaaaacttagaatcgaggatgtgcaggggttgtttacctacgaggattcg 13150915  T
Q  212 acttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtccgtttgctatc 311  Q
    |||||| ||||||||||| || ||||||    |||||||||| |||||||||||||||||||||||    |||||||||||| | |  ||  || |||||    
T  13150914 acttcacgacaaaggtgtacaatgccctacaaattgcgttagttgtgtttccactcatgaggatctaatacatttattctttgcgtacccaatttctatc 13150815  T
Q  312 caagtatggcgcttgtc 328  Q
    ||||||||||| |||||    
T  13150814 caagtatggcggttgtc 13150798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 336
Target Start/End: Complemental strand, 44313908 - 44313617
Alignment:
Q  42 gggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagc 141  Q
    ||||||||||  || ||||||||||| ||  | ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||   ||  ||||| |    
T  44313908 gggaaatattcagtgaagagtgcttaccgcctgtgtgtcgaggaactcattgatgcttctcatcttcgtcgtcccggtaattggtc---aagctggaaac 44313812  T
Q  142 ttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgcccttt 241  Q
    |||||||||||||||||||||  || ||  | ||||| || |||||  | |||||||||||  |||| |||||  || | ||||| || ||||| |||      
T  44313811 ttaaagtacctcctaaggttcggaatttgatttggagaatttgtagacggtgtttacctacgcgaattcgactctattaaaaaggagtacagtgtcctac 44313712  T
Q  242 gcattgcgttagctgtgtttccactcatgaggatctggcgcatttattctttacttgtccgtttgctatccaagtatggcgcttgtcgggacttt 336  Q
    ||| || || || ||||  |||| |||||||||| |||| || |||||||||   |||||||||| ||| ||||||||| | |||||||| ||||    
T  44313711 gcaatgtgtgagttgtgaatccagtcatgaggatatggcacacttattctttgtgtgtccgtttgatatacaagtatggggtttgtcggggcttt 44313617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 30930746 - 30930608
Alignment:
Q  19 tgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccgg 118  Q
    |||||||||| | |||||  || || ||||||||||| || |||||||| ||||| ||| |||| |||||  | ||||| ||||||||||| ||||| ||    
T  30930746 tgatttggaaagctgaaatacacggcaaatattatgtgaaaagtgcttaccgtttgtgtatcgaagaactaattgattcctctcatcttcgtcgtccagg 30930647  T
Q  119 taattggtccggaatttggaagcttaaagtacctcctaa 157  Q
    |||||||||  | || |||||||||||||||||||||||    
T  30930646 taattggtcgtgtatatggaagcttaaagtacctcctaa 30930608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 331
Target Start/End: Original strand, 33212659 - 33212933
Alignment:
Q  57 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 156  Q
    ||||||||||| || || ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||    
T  33212659 aagagtgcttaccgcttgtgtgtcgaggaactcattgatgcttctcatcttcgtcgtcccggtaattggtcaagcatttggaaacttaaagtacctccta 33212758  T
Q  157 aggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctg 256  Q
    ||||||  || ||  | ||||| || |||||    |||||| ||||  |||| ||||| ||||| ||||| || ||||| |||  ||| || || || ||    
T  33212759 aggttcggaatttgatttggagaatttgtagactgtgtttatctacgcgaattcgactccatgataaaggagtacagtgtcctacgcaatgtgtgagttg 33212858  T
Q  257 tgtttccactcatgaggatctggcgcatttattctttacttgtccgtttgctatccaagtatggcgcttgtcggg 331  Q
    ||  |||| |||||||||| |||| || ||||||||| | ||| |||||||||| ||||||||||| ||||||||    
T  33212859 tgaatccagtcatgaggatatggcacacttattctttgcgtgttcgtttgctatacaagtatggcgtttgtcggg 33212933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 28416820 - 28416895
Alignment:
Q  261 tccactcatgaggatctggcgcatttattctttacttgtccgtttgctatccaagtatggcgcttgtcgggacttt 336  Q
    |||| |||||||||| |||| || ||||||||| | |||||||||||||| ||||||||||| |||||||| ||||    
T  28416820 tccagtcatgaggatatggcacacttattctttgcgtgtccgtttgctatacaagtatggcgtttgtcggggcttt 28416895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 18892545 - 18892327
Alignment:
Q  11 agaccgcttgatttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgc 110  Q
    |||||| || |||||||||| | ||||| |||| ||||||||||| ||||| || |||||||| ||||||||||||||  |||| |||||||| ||||||    
T  18892545 agaccgtttaatttggaaggctaaaaagaatggaaaatattatgtgaagagcgcctatcgtttatgtgtcgaggaacttatcgaatcttctcaccttcgc 18892446  T
Q  111 cgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatcc 210  Q
    |||||| | ||||||||  | ||||| || ||||||  || ||| ||| ||||||||||| | |||||||||||||||||||| ||||| || || || |    
T  18892445 cgtcccagcaattggtcaagtatttgaaaacttaaaacacttcccaagcttcaaaacttaatatggaggatgtgtaggggttgcttaccgacgaggatgc 18892346  T
Q  211 gacttcatgacaaaggtgt 229  Q
    | ||||| || ||||||||    
T  18892345 ggcttcaagataaaggtgt 18892327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 16322491 - 16322681
Alignment:
Q  57 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 156  Q
    ||||| || |||||||| ||||||||||| ||  | || ||||||||||||| |||||| |||||||||||  | ||||||||||||||||| ||||| |    
T  16322491 aagagcgcctatcgtttatgtgtcgaggagcttattgactcttctcatcttctccgtcctggtaattggtcaagtatttggaagcttaaagttcctccaa 16322590  T
Q  157 aggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattg 247  Q
    || ||| ||||||| | |||||||||||| |||||||||||||||| |||||  | ||||| || ||||||||||| || ||| |||||||    
T  16322591 agattcgaaacttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcaagataaaggtgtgcaatgtcctatgcattg 16322681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 16334639 - 16334829
Alignment:
Q  57 aagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctccta 156  Q
    ||||| || |||||||| ||||||||||| ||  | || ||||||||||||| |||||| |||||||||||  | ||||||||||||||||| ||||| |    
T  16334639 aagagcgcctatcgtttatgtgtcgaggagcttattgactcttctcatcttctccgtcctggtaattggtcaagtatttggaagcttaaagttcctccaa 16334738  T
Q  157 aggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattg 247  Q
    || ||| ||||||| | |||||||||||| |||||||||||||||| |||||  | ||||| || ||||||||||| || ||| |||||||    
T  16334739 agattcgaaacttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcaagataaaggtgtgcaatgtcctatgcattg 16334829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 165 - 336
Target Start/End: Original strand, 6339408 - 6339578
Alignment:
Q  165 aacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatgacaaaggtgtgcagtgccctttgcattgcgttagctgtgtttcca 264  Q
    |||||||| |||||||||||  ||| ||||||| |||| || || |||| ||||||||||||||||  ||| |     ||||||||||| ||||||||||    
T  6339408 aacttagtttggaggatgtgccggg-ttgtttatctacgaggattcgacatcatgacaaaggtgtgatgtgtctaacacattgcgttagttgtgtttcca 6339506  T
Q  265 ctcatgaggatctggcgcatttattctttacttgtccgtttgctatccaagtatggcgcttgtcgggacttt 336  Q
    | || || |||||||| |||||||||  | ||||||| |||||||||| ||||||||| |||||||| ||||    
T  6339507 cacacgatgatctggcacatttattccctgcttgtccttttgctatcctagtatggcgtttgtcggggcttt 6339578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 34215756 - 34215545
Alignment:
Q  21 atttggaaggatgaaaagcatgggaaatattatgtaaagagtgcttatcgtttttgtgtcgaggaactcttcgattcttctcatcttcgccgtcccggta 120  Q
    |||||||||| ||||||  |||| | |||||  || |||||  |||||| ||| ||||||||||| ||  |  | |||||||||||||||||||| ||||    
T  34215756 atttggaaggctgaaaaaaatggaagatattccgtgaagagcacttatcatttatgtgtcgaggagcttattaactcttctcatcttcgccgtcctggta 34215657  T
Q  121 attggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtaggggttgtttacctactagaatccgacttcatga 220  Q
    |||||||  | ||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||| |||||  | ||||  ||    
T  34215656 attggtcgagtatttggaagcttaaagttcctccaaagattcgaaacttaatttggaggatgtgtcggggttgtttacctacgagaatgaggcttcgaga 34215557  T
Q  221 caaaggtgtgca 232  Q
     |||||||||||    
T  34215556 taaaggtgtgca 34215545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 49498499 - 49498596
Alignment:
Q  93 gattcttctcatcttcgccgtcccggtaattggtccggaatttggaagcttaaagtacctcctaaggttcaaaacttagtctggaggatgtgtagggg 190  Q
    |||||||||||||| || ||||| |||  |||||| |||||||||||||||||||| |||||||| ||| |||| ||||| ||| | |||||| ||||    
T  49498499 gattcttctcatctccgtcgtccaggttcttggtcaggaatttggaagcttaaagttcctcctaaagttaaaaatttagtgtggcgtatgtgtcgggg 49498596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 28792445 - 28792491
Alignment:
Q  243 cattgcgttagctgtgtttccactcatgaggatctggcgcatttatt 289  Q
    ||||||||||||||||| ||||||||||||||| |||| || |||||    
T  28792445 cattgcgttagctgtgtctccactcatgaggatatggcacacttatt 28792491  T

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