View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_high_4 (Length: 590)
Name: NF1711_high_4
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 594735 - 595306
Alignment:
| Q |
1 |
ttattgtgtttcaatttttagattattgcttttccgggaaggaaagtgacattttataatgatgttgatcannnnnnnnnnnnnnataggtgctactcac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |
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| T |
594735 |
ttattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatgatgttgatcatttttcttttttttattggtgctactcac |
594834 |
T |
|
| Q |
101 |
aattcaatcaggattgctcgtgtgtatgtagactgtaattacttttatagttttatgagtttagctgaatctttaggtacgattcttcccttgtgaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594835 |
aattcaatcaggattgctcgtgtgtatgtagactgtaattacttttatagttttatgagtttagctgaatctttaggtacgattcttcccttgtgaaggt |
594934 |
T |
|
| Q |
201 |
cttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcgatgcaaatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
594935 |
cttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactgtcaatgcaaatgaa |
595034 |
T |
|
| Q |
301 |
taatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatattttccaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595035 |
taatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaagaatattttccaaag |
595134 |
T |
|
| Q |
401 |
ttcatcattaatttgcagatttgtacccttgcagttttgcttttacaacttatcacgggttcataagtagtcgactaagtactcaaatgaacgtataaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
595135 |
ttcatcattaatttgcagatttgtaccattgcagttttgcttttacaacttatcacgggttcataagtagtcgactaagtactcaaatgaacgtataaat |
595234 |
T |
|
| Q |
501 |
cttggatggattgtctgtcgccctctctctggtgcatataaattaagagatatgataggaagctagctcggt |
572 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
595235 |
cttggatggattgtctgtcgccctctctctggtgcatataaattaagagatatgataggaagctagctcggt |
595306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26946626 - 26946561
Alignment:
| Q |
1 |
ttattgtgtttcaatttttagattattgcttttccgggaaggaaagtgacattttataatgatgtt |
66 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26946626 |
ttattgtgtttcattttttagattattgcttttccgggaaggaaagtaacattttataatgatgtt |
26946561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 26946540 - 26946496
Alignment:
| Q |
88 |
aggtgctactcacaattcaatcaggattgctcgtgtgtatgtaga |
132 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |
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|
| T |
26946540 |
aggtgctactcataattcaatcaggtttgctcaggtgtatgtaga |
26946496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 187 - 405
Target Start/End: Complemental strand, 28168972 - 28168753
Alignment:
| Q |
187 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || | |||||| |||||||| || |||||||| ||||||||||||| ||||||| |
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|
| T |
28168972 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgcgagttcttcaaggatccacaggagaaagctctgccgtaagaatcctaaactg |
28168873 |
T |
|
| Q |
287 |
tcga-tgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaa |
385 |
Q |
| |
|
| | | |||| ||| || |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| | |||||| |
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|
| T |
28168872 |
ttaaattgaaataaattatttttttcttattgatctttaaggatttgcattctgggattcaggtatatggactatgtttttggaaatgagactgaagcaa |
28168773 |
T |
|
| Q |
386 |
gaatattttccaaagttcat |
405 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
28168772 |
gaacattttccaaagttcat |
28168753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 27925099 - 27925051
Alignment:
| Q |
187 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
27925099 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgtg |
27925051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 28169966 - 28169915
Alignment:
| Q |
4 |
ttgtgtttcaatttttagattattgcttttccgggaaggaaagtgacatttt |
55 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28169966 |
ttgtgttttaatttatagattattgtgtttccgggaaggaaagtaacatttt |
28169915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 1755122 - 1755186
Alignment:
| Q |
2 |
tattgtgtttcaatttttagattattgcttttccgggaaggaaagtgacattttataatgatgtt |
66 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
1755122 |
tattgtgtttcattttttagattattgctattccgggaaggaaagtaacattttataatgatgtt |
1755186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 405
Target Start/End: Original strand, 22476755 - 22476977
Alignment:
| Q |
187 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
286 |
Q |
| |
|
||||||| | |||| ||||||||||||||||| ||| ||||| |||| |||||| |||||||| || |||||||| | ||||||||||| | || | |
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|
| T |
22476755 |
tcccttgcgcaggttttcatgatgaacctttctgcaccctttatctgtgagttcttcaaggatccacaggagaaagctcttccgtaagaatccttcaccg |
22476854 |
T |
|
| Q |
287 |
tcga-tgcaaatgaata---atatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaag |
382 |
Q |
| |
|
|| | | |||| |||| || |||||||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| || ||||||||| | ||| |
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|
| T |
22476855 |
tcaaatttaaataaatatttatgtttttcttattgatctttaagggtttgcattctgggattcaggtatatggactatgtatttggaaatgagactgaag |
22476954 |
T |
|
| Q |
383 |
caagaatattttccaaagttcat |
405 |
Q |
| |
|
|| | | |||||| ||||||||| |
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|
| T |
22476955 |
cacggacattttcgaaagttcat |
22476977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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