View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_40 (Length: 339)

Name: NF1711_high_40
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_40
NF1711_high_40
[»] chr7 (27 HSPs)
chr7 (102-315)||(10031956-10032170)
chr7 (240-315)||(1360532-1360607)
chr7 (17-82)||(30216080-30216145)
chr7 (17-83)||(40726501-40726567)
chr7 (17-82)||(5825293-5825358)
chr7 (17-82)||(28517309-28517374)
chr7 (216-317)||(8920736-8920837)
chr7 (17-82)||(19277313-19277378)
chr7 (17-74)||(22198006-22198063)
chr7 (17-74)||(22239758-22239815)
chr7 (32-83)||(45613863-45613914)
chr7 (277-322)||(15995922-15995967)
chr7 (33-82)||(21326860-21326909)
chr7 (17-82)||(27521491-27521556)
chr7 (34-82)||(24527626-24527674)
chr7 (214-269)||(28770446-28770502)
chr7 (32-76)||(48539216-48539260)
chr7 (16-83)||(10032192-10032259)
chr7 (240-316)||(33887886-33887962)
chr7 (32-82)||(982984-983034)
chr7 (277-315)||(17157804-17157842)
chr7 (214-267)||(27123243-27123297)
chr7 (277-322)||(676401-676446)
chr7 (277-322)||(3256655-3256700)
chr7 (277-322)||(14574766-14574811)
chr7 (277-322)||(16878740-16878785)
chr7 (283-315)||(27359396-27359428)
[»] chr5 (22 HSPs)
chr5 (215-315)||(779056-779156)
chr5 (17-82)||(13166932-13166997)
chr5 (17-82)||(33692077-33692142)
chr5 (17-81)||(35310468-35310532)
chr5 (17-82)||(25663054-25663119)
chr5 (17-82)||(37873660-37873725)
chr5 (17-81)||(430622-430686)
chr5 (214-269)||(18229683-18229738)
chr5 (214-315)||(31672380-31672483)
chr5 (17-83)||(38875658-38875724)
chr5 (17-82)||(27336713-27336778)
chr5 (214-315)||(41583512-41583614)
chr5 (17-82)||(42921717-42921782)
chr5 (35-83)||(9829373-9829421)
chr5 (34-82)||(14423715-14423763)
chr5 (214-269)||(30501221-30501277)
chr5 (214-269)||(30541564-30541620)
chr5 (32-82)||(43129569-43129619)
chr5 (277-322)||(28793368-28793413)
chr5 (219-251)||(17692365-17692397)
chr5 (283-315)||(29342366-29342398)
chr5 (290-322)||(42338035-42338067)
[»] chr3 (22 HSPs)
chr3 (214-316)||(48322240-48322342)
chr3 (17-82)||(26772778-26772843)
chr3 (17-82)||(38146076-38146141)
chr3 (17-76)||(7900878-7900937)
chr3 (17-82)||(37133021-37133086)
chr3 (17-82)||(53785729-53785794)
chr3 (33-82)||(26856784-26856833)
chr3 (25-82)||(44198795-44198852)
chr3 (17-82)||(52741534-52741599)
chr3 (17-81)||(51234636-51234700)
chr3 (22-77)||(5338668-5338723)
chr3 (214-325)||(34758898-34759010)
chr3 (277-316)||(40546360-40546399)
chr3 (277-315)||(36600507-36600545)
chr3 (216-269)||(16867537-16867590)
chr3 (277-322)||(25548226-25548271)
chr3 (17-82)||(38670902-38670967)
chr3 (277-322)||(40392425-40392470)
chr3 (22-83)||(49017988-49018049)
chr3 (29-82)||(52411913-52411966)
chr3 (285-322)||(55110068-55110105)
chr3 (214-269)||(29611989-29612045)
[»] chr6 (10 HSPs)
chr6 (17-83)||(17249326-17249392)
chr6 (20-82)||(33220733-33220795)
chr6 (16-82)||(34304515-34304581)
chr6 (16-82)||(34554299-34554365)
chr6 (17-82)||(45699-45764)
chr6 (17-82)||(4165944-4166009)
chr6 (17-82)||(959600-959665)
chr6 (17-82)||(4206618-4206683)
chr6 (277-318)||(13070674-13070715)
chr6 (22-74)||(3714942-3714994)
[»] chr8 (14 HSPs)
chr8 (17-82)||(3187989-3188054)
chr8 (215-317)||(42760180-42760282)
chr8 (17-82)||(38815314-38815379)
chr8 (32-82)||(500262-500312)
chr8 (17-83)||(25021835-25021901)
chr8 (17-82)||(39434687-39434752)
chr8 (214-258)||(9200007-9200051)
chr8 (279-315)||(27055945-27055981)
chr8 (214-322)||(31206279-31206388)
chr8 (277-322)||(22209439-22209484)
chr8 (39-76)||(36004164-36004201)
chr8 (277-322)||(38956917-38956962)
chr8 (214-269)||(16723276-16723332)
chr8 (285-313)||(40299689-40299717)
[»] chr1 (25 HSPs)
chr1 (17-82)||(20259819-20259884)
chr1 (214-313)||(34445638-34445738)
chr1 (17-83)||(28041148-28041214)
chr1 (277-322)||(4039630-4039675)
chr1 (17-82)||(19035467-19035532)
chr1 (17-82)||(29169815-29169880)
chr1 (17-75)||(2764499-2764557)
chr1 (36-82)||(21473042-21473088)
chr1 (277-322)||(17112739-17112784)
chr1 (240-318)||(33744167-33744245)
chr1 (17-82)||(34644586-34644651)
chr1 (240-322)||(36321653-36321735)
chr1 (35-80)||(43831600-43831645)
chr1 (33-82)||(45659670-45659719)
chr1 (242-315)||(37037645-37037718)
chr1 (215-315)||(37705847-37705948)
chr1 (17-75)||(24177540-24177598)
chr1 (277-327)||(40203101-40203151)
chr1 (277-322)||(4521036-4521081)
chr1 (277-318)||(17554891-17554932)
chr1 (17-82)||(38731629-38731694)
chr1 (277-313)||(2633064-2633100)
chr1 (214-269)||(31807861-31807917)
chr1 (214-269)||(39150551-39150607)
chr1 (214-269)||(48022434-48022490)
[»] chr2 (22 HSPs)
chr2 (17-76)||(28225020-28225079)
chr2 (32-82)||(19161805-19161855)
chr2 (214-315)||(2825991-2826093)
chr2 (17-82)||(4413088-4413153)
chr2 (17-81)||(41867931-41867995)
chr2 (277-315)||(31513785-31513823)
chr2 (277-322)||(44941109-44941154)
chr2 (34-82)||(17344675-17344723)
chr2 (277-313)||(27948048-27948084)
chr2 (35-82)||(5532457-5532504)
chr2 (35-82)||(9685437-9685484)
chr2 (240-315)||(2888904-2888979)
chr2 (277-315)||(14102334-14102372)
chr2 (214-259)||(2769337-2769382)
chr2 (214-315)||(3882585-3882687)
chr2 (277-322)||(5961991-5962036)
chr2 (277-322)||(6761754-6761799)
chr2 (277-322)||(7271813-7271858)
chr2 (278-315)||(19495237-19495274)
chr2 (35-76)||(20142753-20142794)
chr2 (210-269)||(4762314-4762374)
chr2 (240-313)||(16717605-16717678)
[»] scaffold0148 (1 HSPs)
scaffold0148 (32-82)||(33285-33335)
[»] chr4 (19 HSPs)
chr4 (17-81)||(31847107-31847171)
chr4 (18-74)||(55933492-55933548)
chr4 (17-76)||(3330016-3330075)
chr4 (17-83)||(46440910-46440976)
chr4 (17-82)||(12918394-12918459)
chr4 (277-322)||(33982458-33982503)
chr4 (17-82)||(53619606-53619671)
chr4 (214-269)||(8297840-8297896)
chr4 (23-83)||(48656931-48656991)
chr4 (215-315)||(53737829-53737930)
chr4 (17-76)||(50483224-50483283)
chr4 (17-82)||(7536593-7536658)
chr4 (33-82)||(30940761-30940809)
chr4 (277-322)||(44670858-44670903)
chr4 (277-322)||(49446621-49446666)
chr4 (17-82)||(56462128-56462193)
chr4 (277-313)||(23230272-23230308)
chr4 (290-322)||(32055368-32055400)
chr4 (285-317)||(54543611-54543643)
[»] scaffold0009 (1 HSPs)
scaffold0009 (17-76)||(103126-103185)
[»] scaffold0031 (1 HSPs)
scaffold0031 (25-82)||(49439-49496)
[»] scaffold0490 (1 HSPs)
scaffold0490 (17-82)||(6354-6419)
[»] scaffold0186 (1 HSPs)
scaffold0186 (17-73)||(10380-10436)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 10032170 - 10031956
Alignment:
Q  102 aaataacgatttagattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032170 aaataacgatttaaattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat 10032071  T
Q  202 caattacgaaatggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttcc 300  Q
    |||||||||||  |||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  10032070 caattacgaaagtgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttcc 10031971  T
Q  301 aatgcattgattaca 315  Q
    |||||||||||||||    
T  10031970 aatgcattgattaca 10031956  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 1360532 - 1360607
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  1360532 actctttaagcattccaaaattagtaattattttttaaaaaagttaaatgtttcgatttccaatgcattgattaca 1360607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 30216145 - 30216080
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  30216145 tctgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacac 30216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 40726567 - 40726501
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||| ||||||    
T  40726567 tctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacaca 40726501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5825293 - 5825358
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  5825293 tctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacac 5825358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 28517374 - 28517309
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||| | ||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  28517374 tctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac 28517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 317
Target Start/End: Complemental strand, 8920837 - 8920736
Alignment:
Q  216 tcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||||||||| | |||||| | ||||||||||||||||||||  || |||||        |||||| ||||||||| |||||||||||||||||||||    
T  8920837 tcttgttaacgaattcccccgagcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatgcattgattaca 8920738  T
Q  316 ta 317  Q
    ||    
T  8920737 ta 8920736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19277313 - 19277378
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  19277313 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 19277378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 22198006 - 22198063
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 74  Q
    |||||||||| ||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  22198006 tctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 22239815 - 22239758
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 74  Q
    |||||||||| ||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  22239815 tctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22239758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 45613914 - 45613863
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||||||||||||||  | |||||||||||||||||||||||||| ||||||    
T  45613914 ccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacaca 45613863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 15995922 - 15995967
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  15995922 aaaaagttaaatatttcgattttcaatgcattgattacacatattt 15995967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 21326909 - 21326860
Alignment:
Q  33 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  21326909 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 21326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27521491 - 27521556
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| ||| || ||||||||||||||| || |||||||  |||||||||||||| |||||    
T  27521491 tctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcagaacac 27521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 24527626 - 24527674
Alignment:
Q  34 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  24527626 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 24527674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 28770446 - 28770502
Alignment:
Q  214 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| || |||||  ||||||||||||| ||||||||||||||||    
T  28770446 ggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaatta 28770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 48539216 - 48539260
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  48539216 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 48539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 10032259 - 10032192
Alignment:
Q  16 atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||| |||||||||||| |||| | ||||||| | || |||||||||||| |||||||||| ||||||    
T  10032259 atctaatgctaagaagctgaaaatatcaaaagcaaatagtataaaaacatattgattgtcagaacaca 10032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 33887962 - 33887886
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacat 316  Q
    ||||||||||||||||||||| | ||||||       ||||||| |||| |||| |||| |||||||||||||||||    
T  33887962 actctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacat 33887886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 982984 - 983034
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| |||||    
T  982984 ccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacac 983034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 17157842 - 17157804
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  17157842 aaaaagtcaaatgtttcaatttccaatgcattgattaca 17157804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 27123243 - 27123297
Alignment:
Q  214 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaat 267  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||    
T  27123243 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaat 27123297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 676446 - 676401
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||||    
T  676446 aaaaagttaaatatttcgattttaaatgcattgattacacatattt 676401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 3256700 - 3256655
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||||||||||||||||||||| ||| |||| ||||||    
T  3256700 aaaaagtcaaatgtttcgatttccaatgcactgaatacacatattt 3256655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 14574766 - 14574811
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||||||||  |||||||| |||||||||||||||| ||||||    
T  14574766 aaaaagttaaatacttcgattttcaatgcattgattacacatattt 14574811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 16878740 - 16878785
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||    
T  16878740 aaaaagttaaatatttcgattctcaatgcattgattacaaatattt 16878785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 27359396 - 27359428
Alignment:
Q  283 ttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||| ||||||||||||||||||||||||||    
T  27359396 ttaaatatttcgatttccaatgcattgattaca 27359428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 779056 - 779156
Alignment:
Q  215 gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    ||||||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  779056 gtcttgttaacgagtgccccctgggcactctttaaacattcaaaaattagtaattatttttt-aaaaagttaaatgtttcgatttccaatgcattgatta 779154  T
Q  314 ca 315  Q
    ||    
T  779155 ca 779156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13166997 - 13166932
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  13166997 tctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 13166932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33692142 - 33692077
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||    
T  33692142 tctgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacac 33692077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 35310468 - 35310532
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 81  Q
    |||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  35310468 tctgatgccaggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaaca 35310532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 25663119 - 25663054
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||| |||||    
T  25663119 tctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacac 25663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37873725 - 37873660
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  37873725 tctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 37873660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 430622 - 430686
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 81  Q
    |||||||||| |||| | ||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  430622 tctgatgctatgaagacaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 18229738 - 18229683
Alignment:
Q  214 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| |||||  ||||||||||||||| ||||| ||||||||||    
T  18229738 ggtcttgttaacgagtgcccccaagtactctttaagcatcccaaatttagtaatta 18229683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 31672380 - 31672483
Alignment:
Q  214 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta-nnnnnnnaaaaagttaaatgtttcgatttccaatgcattgat 311  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  || || ||        ||||||| ||||||||| |||||||||||||||||    
T  31672380 ggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattgat 31672479  T
Q  312 taca 315  Q
    ||||    
T  31672480 taca 31672483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 38875658 - 38875724
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||| ||||| ||||| |||||||||||||  | |||||| ||||||||||||||||||| ||||||    
T  38875658 tctggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacaca 38875724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27336713 - 27336778
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| ||||||  |||||||||||| | |||||||||||  ||||||||||||| |||||    
T  27336713 tctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacac 27336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 41583512 - 41583614
Alignment:
Q  214 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    |||||||||||||||| ||||||||| |||||||||| || ||||| |||| |||||       |||||||||||| || | | |||||||||||||| |    
T  41583512 ggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaat 41583611  T
Q  313 aca 315  Q
    |||    
T  41583612 aca 41583614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 42921717 - 42921782
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||| ||| | ||||||||||| |||||||||||||| |||||    
T  42921717 tctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacac 42921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9829421 - 9829373
Alignment:
Q  35 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||||||||||  || ||||||||||| |||||||||||||||||||||    
T  9829421 aaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacaca 9829373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14423715 - 14423763
Alignment:
Q  34 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  14423715 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 14423763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 30501277 - 30501221
Alignment:
Q  214 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta 30501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 30541620 - 30541564
Alignment:
Q  214 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta 30541564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 43129569 - 43129619
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||| ||||||||| | |||||| ||||||||||||||||||| |||||    
T  43129569 ccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacac 43129619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 28793368 - 28793413
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| ||||||||||| ||||||| |||||||||||||    
T  28793368 aaaaagtcaaatatttcgatttccgatgcattaattacatatattt 28793413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 17692397 - 17692365
Alignment:
Q  219 tgttaacgagtacccccgggtactctttaagca 251  Q
    ||||||||||| |||||||||||||||||||||    
T  17692397 tgttaacgagtgcccccgggtactctttaagca 17692365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 29342366 - 29342398
Alignment:
Q  283 ttaaatgtttcgatttccaatgcattgattaca 315  Q
    ||||||||||| |||||||||||||||||||||    
T  29342366 ttaaatgtttcaatttccaatgcattgattaca 29342398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 42338067 - 42338035
Alignment:
Q  290 tttcgatttccaatgcattgattacatatattt 322  Q
    ||||||||||||||||||||||||||| |||||    
T  42338067 tttcgatttccaatgcattgattacatgtattt 42338035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 48322342 - 48322240
Alignment:
Q  214 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    |||||||||||||||||  |  ||||||||||||||||||| ||||| ||||||||       ||||||| ||||||||||||||||||| |||||||||    
T  48322342 ggtcttgttaacgagtattcaggggtactctttaagcattctaaaataagtaattatttttttaaaaagtcaaatgtttcgatttccaatacattgatta 48322243  T
Q  314 cat 316  Q
    |||    
T  48322242 cat 48322240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 26772778 - 26772843
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  26772778 tctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 26772843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38146076 - 38146141
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| |||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  38146076 tctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgattgtcaaaacac 38146141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 7900878 - 7900937
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    |||||||||| |||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  7900878 tctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca 7900937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37133086 - 37133021
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||||||| |||||||||| ||||  | |||||||||||||||||||||||||| |||||    
T  37133086 tctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacac 37133021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 53785729 - 53785794
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  53785729 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 53785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 26856833 - 26856784
Alignment:
Q  33 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||| |||||||| ||||||||||||| |||||||||||||| |||||    
T  26856833 cgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacac 26856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 44198795 - 44198852
Alignment:
Q  25 taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||| |||||||||||||||| | ||||||||||| |||||||||| ||| |||||    
T  44198795 taagaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacac 44198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 52741599 - 52741534
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| || ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  52741599 tctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 52741534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 51234636 - 51234700
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 81  Q
    ||||||||||  ||| |||||||||||||| || ||||||||||| ||||||| |||||| ||||    
T  51234636 tctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtcataaca 51234700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5338668 - 5338723
Alignment:
Q  22 tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaa 77  Q
    ||||| |||||||||||||||||||| | || |||||||| |||||||| ||||||    
T  5338668 tgctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaa 5338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 34758898 - 34759010
Alignment:
Q  214 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    |||||||||||||||| || |||||  |||||||||| |||| ||||  ||||||||       ||||||| |||| |||||| | |  |||||||||||    
T  34758898 ggtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatt 34758997  T
Q  313 acatatatttcca 325  Q
    |||||||||||||    
T  34758998 acatatatttcca 34759010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 40546360 - 40546399
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacat 316  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  40546360 aaaaagtcaaatatttcgatttccaatgcattgattacat 40546399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 36600545 - 36600507
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  36600545 aaaaagttaaatttttcgatttcccatgcattgattaca 36600507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 16867590 - 16867537
Alignment:
Q  216 tcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta 269  Q
    ||||||||| || |||| |||| ||||||||||||||||| |||| ||||||||    
T  16867590 tcttgttaaggattacctccggatactctttaagcattcctaaataagtaatta 16867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 25548271 - 25548226
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| |||| ||||| ||||||||||||||| ||||||    
T  25548271 aaaaagttaaatatttcaatttctaatgcattgattacacatattt 25548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 38670967 - 38670902
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||  ||||| ||||||||||||  | || |||||||| |||||||||||||| |||||    
T  38670967 tctgatgctagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtcagaacac 38670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 40392425 - 40392470
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| |||  ||||| ||||||||||||||||||||||    
T  40392425 aaaaagttaaatatttttatttctaatgcattgattacatatattt 40392470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 49017988 - 49018049
Alignment:
Q  22 tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    ||||| ||| |||||||||| ||||  | |||||||||||||||||||||||| | ||||||    
T  49017988 tgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacaca 49018049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 52411966 - 52411913
Alignment:
Q  29 aagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| |||||||||||||| | |||| |||||| |||||||||||||| |||||    
T  52411966 aagctgaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcagaacac 52411913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 55110068 - 55110105
Alignment:
Q  285 aaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  55110068 aaatatttcgattttcaatgcattgattacatatattt 55110105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 29611989 - 29612045
Alignment:
Q  214 ggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||||||  ||||||||| ||||| ||||| ||||||||    
T  29611989 ggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaatta 29612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17249392 - 17249326
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||||    
T  17249392 tctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacaca 17249326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 33220795 - 33220733
Alignment:
Q  20 gatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||    
T  33220795 gatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacac 33220733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 34304515 - 34304581
Alignment:
Q  16 atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  34304515 atctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 34304581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 34554365 - 34554299
Alignment:
Q  16 atctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||||||| |||||| ||| |||||    
T  34554365 atctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacac 34554299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45764 - 45699
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||||||| |||||||||||||||  | |||| |||||| |||||||||||||| |||||    
T  45764 tctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacac 45699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4166009 - 4165944
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||| ||||||| |||||||||||||| |||||    
T  4166009 tctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacac 4165944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 959600 - 959665
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||| ||||||||  | |||||||||| ||||||||||||||| |||||    
T  959600 tctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacac 959665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4206683 - 4206618
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||| ||||||| |||||| ||||||| |||||    
T  4206683 tctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacac 4206618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 13070715 - 13070674
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatat 318  Q
    |||||||||||||||  |||||||||| ||||||||||||||    
T  13070715 aaaaagttaaatgttgtgatttccaatacattgattacatat 13070674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3714942 - 3714994
Alignment:
Q  22 tgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 74  Q
    |||||||||| | ||||||||||||  ||||| |||||||||||||| |||||    
T  3714942 tgctaagaagtcaaaagtgtcaaaaacagatgatataaaaacatgttaattgt 3714994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3187989 - 3188054
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||||||||||| ||||||| | ||||||||||| |||||||||||||| |||||    
T  3187989 tctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacac 3188054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 42760282 - 42760180
Alignment:
Q  215 gtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattac 314  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||  || |||||       ||||| | ||||||||| ||||||||||||||||||||    
T  42760282 gtcttgttaacgagttcccctggacactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattac 42760183  T
Q  315 ata 317  Q
    |||    
T  42760182 ata 42760180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38815314 - 38815379
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||||| |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  38815314 tctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 38815379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 500262 - 500312
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| |||||    
T  500262 ccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac 500312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 25021901 - 25021835
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||| ||||| |||||| ||| ||||||||| | |||||||||||||||||||||||| | ||||||    
T  25021901 tctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca 25021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 39434687 - 39434752
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||| | ||||||||||||  | ||||||||||| |||||||||||||| |||||    
T  39434687 tctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac 39434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 9200007 - 9200051
Alignment:
Q  214 ggtcttgttaacgagtacccccgggtactctttaagcattccaaa 258  Q
    |||||||||||||||||||||| ||||||||||||| || |||||    
T  9200007 ggtcttgttaacgagtacccccaggtactctttaaggatcccaaa 9200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 27055945 - 27055981
Alignment:
Q  279 aaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27055945 aaagttaaatgtttcgatttccaatgtattgattaca 27055981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 31206279 - 31206388
Alignment:
Q  214 ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    |||||||||||||||| ||| || ||||||||||||| |||| |||| ||| |||||       ||||| | |||| ||| ||||||| |||||||||||    
T  31206279 ggtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatt 31206378  T
Q  313 acatatattt 322  Q
    ||| ||||||    
T  31206379 acacatattt 31206388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 22209439 - 22209484
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| ||| |||||||||  ||||||||||||||||||    
T  22209439 aaaaagttaaatattttgatttccaagacattgattacatatattt 22209484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 36004164 - 36004201
Alignment:
Q  39 tgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  36004164 tgtcaaatgtaaatggtataaaaacatgttgattgtca 36004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 38956917 - 38956962
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| ||||||||||| |||||||||||||| ||||||    
T  38956917 aaaaagtcaaatatttcgatttccgatgcattgattacacatattt 38956962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 16723332 - 16723276
Alignment:
Q  214 ggtcttgttaacgagt-acccccgggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||||||    
T  16723332 ggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaatta 16723276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 40299689 - 40299717
Alignment:
Q  285 aaatgtttcgatttccaatgcattgatta 313  Q
    |||||||||||||||||||||||||||||    
T  40299689 aaatgtttcgatttccaatgcattgatta 40299717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 20259884 - 20259819
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||||||| ||||||||||||| | || |||||||||||||||||||||||||| |||||    
T  20259884 tctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacac 20259819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 34445638 - 34445738
Alignment:
Q  214 ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    |||||||||||||||| ||||||| | |||||||||| |||||||||  || |||||       ||||||| |||| |||||||||||||||||||||||    
T  34445638 ggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatt 34445737  T
Q  313 a 313  Q
    |    
T  34445738 a 34445738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 28041214 - 28041148
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||||| |||||||||||| ||||||    
T  28041214 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacaca 28041148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 4039675 - 4039630
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||    
T  4039675 aaaaagtcaaatatttcgatttccaatgcattgattacatatattt 4039630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19035467 - 19035532
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| ||| |||||||||||||| ||||||||||| |||||||||||||| |||||    
T  19035467 tctggtgctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac 19035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29169880 - 29169815
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  29169880 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 29169815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2764499 - 2764557
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtc 75  Q
    |||||||||| ||||| |||||||||||||| | |||| |||||| |||||||||||||    
T  2764499 tctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtc 2764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 21473042 - 21473088
Alignment:
Q  36 aagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||    
T  21473042 aagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 21473088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 17112739 - 17112784
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||||    
T  17112739 aaaaagtcaaatattttgatttccaatgcattgattacatatattt 17112784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 33744245 - 33744167
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacatat 318  Q
    ||||||||||||||  ||||| ||||||||       ||||||| |||| ||||||||| |||||||||||||||||||    
T  33744245 actctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatat 33744167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 34644586 - 34644651
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||||||||||||||||||  | ||||||||||| ||||| | |||||| |||||    
T  34644586 tctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacac 34644651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 36321735 - 36321653
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||||||||| ||||||  ||||||||        ||||||||||  ||||||||||||||||||||||||||| |||||    
T  36321735 actctttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatgcattgattacatgtattt 36321653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 43831645 - 43831600
Alignment:
Q  35 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaac 80  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||    
T  43831645 aaagtgtcacaagtcaatggtataaaaacatgttgattgtcaaaac 43831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 45659719 - 45659670
Alignment:
Q  33 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  45659719 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 45659670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 37037645 - 37037718
Alignment:
Q  242 tctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    ||||||||||||  |||| |||||||||       ||||||||||||||||| ||||||||| |||||||||||    
T  37037645 tctttaagcattttaaaaatagtaattatttttaaaaaaagttaaatgtttcaatttccaatacattgattaca 37037718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 37705847 - 37705948
Alignment:
Q  215 gtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    ||||||||||||||| ||||||| | ||||||||||||||| ||||| ||||||||        |||| | |||||||| ||||| ||||||||| ||||    
T  37705847 gtcttgttaacgagtgcccccggagcactctttaagcattcgaaaatgagtaattattttttagaaaactcaaatgttttgattttcaatgcattaatta 37705946  T
Q  314 ca 315  Q
    ||    
T  37705947 ca 37705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 24177598 - 24177540
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtc 75  Q
    |||||||||| ||| |||||| ||||||||  | |||||||||||| ||||||||||||    
T  24177598 tctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 40203151 - 40203101
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatatttccaga 327  Q
    ||||||| |||| |||| ||||||||||||||||||||| |||||| ||||    
T  40203151 aaaaagtcaaatatttcaatttccaatgcattgattacacatattttcaga 40203101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 4521081 - 4521036
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||  |||| |||||||||||||||||||||| |||||    
T  4521081 aaaaagttaaacatttcaatttccaatgcattgattacatgtattt 4521036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 17554891 - 17554932
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatat 318  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  17554891 aaaaagttaaatgtttcaatttacaatgcattgattatatat 17554932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38731629 - 38731694
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| |||||||||||| ||||| ||||||| | || ||||||||  ||||||||||||| |||||    
T  38731629 tctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaacac 38731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 2633064 - 2633100
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    |||||||||||||||||||||||||||  ||||||||    
T  2633064 aaaaagttaaatgtttcgatttccaatatattgatta 2633100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 31807917 - 31807861
Alignment:
Q  214 ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||||| | ||| ||||||||||| ||||| ||||||||    
T  31807917 ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaatta 31807861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 39150551 - 39150607
Alignment:
Q  214 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||    
T  39150551 ggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaatta 39150607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 48022490 - 48022434
Alignment:
Q  214 ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| |||| | |||||||||||||||| ||| | ||||||||||    
T  48022490 ggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaatta 48022434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 28225020 - 28225079
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    ||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  28225020 tctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 28225079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 19161855 - 19161805
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  19161855 ccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 19161805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 2826093 - 2825991
Alignment:
Q  214 ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    ||||||||||||||||  ||| | |||||||||||||||| | ||||| || |||||       ||||||| |||| |||||||||||||||||||||||    
T  2826093 ggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgatt 2825994  T
Q  313 aca 315  Q
    |||    
T  2825993 aca 2825991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4413153 - 4413088
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  4413153 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 4413088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41867995 - 41867931
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 81  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  41867995 tctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca 41867931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 31513785 - 31513823
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31513785 aaaaatttaaatgtttcgatttccaatgcattgattaca 31513823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 44941154 - 44941109
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||    
T  44941154 aaaaagttaaagatttcgatttccgatgcattgattacatatattt 44941109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 17344675 - 17344723
Alignment:
Q  34 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||||||| | ||||||||||| |||||||||||| |||||||    
T  17344675 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacac 17344723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 27948084 - 27948048
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27948084 aaaaagtcaaatgtttcgatttccaatgcattgatta 27948048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 5532457 - 5532504
Alignment:
Q  35 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||||| || |||||||| |||||||||||||| |||||    
T  5532457 aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacac 5532504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 9685484 - 9685437
Alignment:
Q  35 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  9685484 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 9685437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 2888904 - 2888979
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||||||||| | ||||||| |||||||       |||||||||||| ||||||||||||||| ||||| ||||    
T  2888904 actctttaagcacttcaaaatttgtaattattttttaaaaaagttaaatatttcgatttccaatgtattgactaca 2888979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 14102372 - 14102334
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  14102372 aaaaagttaaatatttcgatttccaatacattgattaca 14102334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 2769382 - 2769337
Alignment:
Q  214 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaa 259  Q
    |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  2769382 ggtcttgttaacgagtgccccggggcactctttaagcattcaaaaa 2769337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 3882585 - 3882687
Alignment:
Q  214 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 312  Q
    |||||||||||||||| ||| ||||  ||||||||||||||| ||||| || |||||       |||| || |||| ||||| ||| |||||||||||||    
T  3882585 ggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatt 3882684  T
Q  313 aca 315  Q
    |||    
T  3882685 aca 3882687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 5962036 - 5961991
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||| |||||| |||| ||||||||||||||||||||||| ||||    
T  5962036 aaaaaattaaatatttcaatttccaatgcattgattacataaattt 5961991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 6761799 - 6761754
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| |||| ||||||||||||||||||||||| ||||    
T  6761799 aaaaagtcaaatatttcaatttccaatgcattgattacataaattt 6761754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 7271813 - 7271858
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| |||  ||||||||||||||||||||||||||||    
T  7271813 aaaaagtcaaatatttttatttccaatgcattgattacatatattt 7271858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 19495237 - 19495274
Alignment:
Q  278 aaaagttaaatgtttcgatttccaatgcattgattaca 315  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  19495237 aaaagtcaaatatttcgatttccaatgcattgattaca 19495274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 20142794 - 20142753
Alignment:
Q  35 aaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  20142794 aaagtgtcaaaagaaaatggtataaaagcatgttgattgtca 20142753  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 4762314 - 4762374
Alignment:
Q  210 aaatggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||||||| | ||||| | ||| ||||||||| ||||| ||||||||||    
T  4762314 aaatggtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaatta 4762374  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 16717605 - 16717678
Alignment:
Q  240 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    ||||||||||||||| ||||| ||||||||       ||||| |||||| ||| ||||||||| ||||||||||    
T  16717605 actctttaagcattctaaaataagtaattattctttaaaaaaattaaatattttgatttccaaagcattgatta 16717678  T

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Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 33285 - 33335
Alignment:
Q  32 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  33285 ccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacac 33335  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 31847107 - 31847171
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 81  Q
    |||||||||| |||||| ||||||||||||| | |||||| ||||||||||||| ||||| ||||    
T  31847107 tctgatgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaaca 31847171  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 55933548 - 55933492
Alignment:
Q  18 ctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 74  Q
    ||||||||| |||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  55933548 ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 55933492  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 3330016 - 3330075
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    |||||||||| |||||| ||||||||||||| | || |||||||| ||||||||||||||    
T  3330016 tctgatgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtca 3330075  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 46440976 - 46440910
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    |||||||||| |||||||||||||||||||| | ||| ||||||||| |||| ||||| | ||||||    
T  46440976 tctgatgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgttagaacaca 46440910  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 12918459 - 12918394
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||| ||||||||||||||||| || ||||||||   |||||||||||| |||||    
T  12918459 tctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacac 12918394  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 33982458 - 33982503
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    |||||||||||| ||||||||||| || ||||||||||||||||||    
T  33982458 aaaaagttaaatatttcgatttccgatacattgattacatatattt 33982503  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 53619606 - 53619671
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||||||||| |||| | ||||||||||||  | ||||||||||| |||||||||||||| |||||    
T  53619606 tctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac 53619671  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 8297840 - 8297896
Alignment:
Q  214 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta 269  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||| ||||||||||    
T  8297840 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatta 8297896  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 48656991 - 48656931
Alignment:
Q  23 gctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 83  Q
    ||||||||| ||||||||||||||  | ||||||||||||||| ||||||| || ||||||    
T  48656991 gctaagaagtcgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacaca 48656931  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 53737930 - 53737829
Alignment:
Q  215 gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    |||||| |||||||| ||||| ||| ||||||||||| ||||||||| || |||||       ||||| | |||| ||||||||||||||||||||| ||    
T  53737930 gtcttgctaacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaata 53737831  T
Q  314 ca 315  Q
    ||    
T  53737830 ca 53737829  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 50483283 - 50483224
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    |||| ||||| ||| ||||||||||| |||| | ||||||||||| ||||||||||||||    
T  50483283 tctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtca 50483224  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7536658 - 7536593
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| | |||| ||||||||  | || |||||||||||||||||||||||||||||    
T  7536658 tctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtcaaaacac 7536593  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 30940809 - 30940761
Alignment:
Q  33 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  30940809 cgaaagtgtcaaaagca-atggtataaaagcatgttgattgtcagaacac 30940761  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 44670903 - 44670858
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||| |||||| ||||||||||||||||| | |||||||||||||    
T  44670903 aaaaaattaaatatttcgatttccaatgcaataattacatatattt 44670858  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 49446666 - 49446621
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgattacatatattt 322  Q
    ||||||| |||| ||||||||||| |||||||||||||| ||||||    
T  49446666 aaaaagtcaaatatttcgatttccgatgcattgattacacatattt 49446621  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 56462193 - 56462128
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| || |||||||| |||  | |||||||||||||||||||||||||| |||||    
T  56462193 tctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacac 56462128  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 23230308 - 23230272
Alignment:
Q  277 aaaaagttaaatgtttcgatttccaatgcattgatta 313  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  23230308 aaaaagttaaatgtttcaattttcaatgcattgatta 23230272  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 32055400 - 32055368
Alignment:
Q  290 tttcgatttccaatgcattgattacatatattt 322  Q
    ||||||||||||||||||||||||||| |||||    
T  32055400 tttcgatttccaatgcattgattacatgtattt 32055368  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 54543611 - 54543643
Alignment:
Q  285 aaatgtttcgatttccaatgcattgattacata 317  Q
    ||||||||| |||||||||||||||||||||||    
T  54543611 aaatgtttcaatttccaatgcattgattacata 54543643  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 103126 - 103185
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 76  Q
    |||| ||||| ||| |||||||||||||||| | ||||||||||| ||||||||||||||    
T  103126 tctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 103185  T

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Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 49439 - 49496
Alignment:
Q  25 taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    ||||||| ||||||||||||||| | ||||||||||| || ||||||||||| |||||    
T  49439 taagaagtcgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacac 49496  T

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Target: scaffold0490 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6354 - 6419
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 82  Q
    |||| ||||| ||| | |||||||||||||| | |||||||| || |||||||||||||| |||||    
T  6354 tctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacac 6419  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 10380 - 10436
Alignment:
Q  17 tctgatgctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattg 73  Q
    |||| ||||| ||||||  |||||||||||| | ||||||||||| |||||||||||    
T  10380 tctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattg 10436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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