View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_42 (Length: 327)
Name: NF1711_high_42
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 21701328 - 21701512
Alignment:
| Q |
2 |
gcatctcgaataatatctgatagaccttctgcaccaataataaacaggtgagggggtagaggatcaccttgacaaggccccctatctgggataatcggac |
101 |
Q |
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| T |
21701328 |
gcatctcgaataagaggtgatagaccttctgcaccaataataaacaggtaaggggatagaggatcaccttgacaaggccccttgtctgggataaccagac |
21701427 |
T |
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| Q |
102 |
cacccatctcattattaaccaagatagagtaatcgacggattctatgcataaagacatccattctatccatttctcagagaaaac |
186 |
Q |
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| T |
21701428 |
catccttctcattattaaccaagatagagtaatcaatggattctatgcataaagacatccattgtatccatttctcagagaaaac |
21701512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 21703573 - 21703703
Alignment:
| Q |
182 |
aaaaccatcttaaccgttacacctttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagccacacatccatcatttctac |
281 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21703573 |
aaaaccatcttaaccattacacctttaagatagtcccaatccattctatcatatactttgttgatatctaacttcaaagccacacatccatcatttctac |
21703672 |
T |
|
| Q |
282 |
tctttttatttttcatatagtgtataacctg |
312 |
Q |
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| T |
21703673 |
tctttctagttttcatacagtgtataacctg |
21703703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 19823572 - 19823627
Alignment:
| Q |
206 |
ttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagc |
261 |
Q |
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| T |
19823572 |
ttaagatagtcccaatccattctatcataagctttgctgatgtcaagcttcaaagc |
19823627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 36303780 - 36303724
Alignment:
| Q |
209 |
agatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagccaca |
265 |
Q |
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||||| ||| |||| ||||||||||| || |||||||| ||||| |||||||||||| |
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| T |
36303780 |
agataatcccaatcgattctatcataagccttgttgatgtctaatttcaaagccaca |
36303724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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