View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_48 (Length: 302)
Name: NF1711_high_48
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 42393861 - 42394148
Alignment:
| Q |
1 |
ctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393861 |
ctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattca |
42393960 |
T |
|
| Q |
101 |
acaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393961 |
acaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgagg |
42394060 |
T |
|
| Q |
201 |
caccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccctatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
42394061 |
caccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatg |
42394148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 42377959 - 42378229
Alignment:
| Q |
17 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaa |
116 |
Q |
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|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaa |
42378058 |
T |
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| Q |
117 |
atccttactttcact---ctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattc |
213 |
Q |
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||| |||| || | |||||| || || | |||||| || |||||||||||||||||| |||||||| |||||||| |||||||||||| |||| |
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| T |
42378059 |
gtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattc |
42378158 |
T |
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| Q |
214 |
atatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccc |
284 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||| |
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| T |
42378159 |
atatctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccc |
42378229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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