View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_49 (Length: 298)
Name: NF1711_high_49
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_49 |
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[»] chr2 (4 HSPs) |
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[»] chr8 (4 HSPs) |
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[»] chr4 (3 HSPs) |
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[»] scaffold0023 (1 HSPs) |
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[»] chr6 (3 HSPs) |
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[»] chr5 (6 HSPs) |
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[»] chr1 (5 HSPs) |
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[»] scaffold0862 (1 HSPs) |
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[»] scaffold0525 (1 HSPs) |
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[»] scaffold0251 (1 HSPs) |
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[»] chr3 (7 HSPs) |
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[»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 1813605 - 1813750
Alignment:
Q |
99 |
cacgttcattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaacacaatctccacc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
1813605 |
cacgttcattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaacacaatctccacc |
1813704 |
T |
|
Q |
199 |
ataaacagtattcttcaattgaaattgaaccattcttagaatttct |
244 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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T |
1813705 |
ataaacagtattcttcacttgaaattgaaccattcttagaatttct |
1813750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 41832573 - 41832628
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
41832573 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
41832628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 41830168 - 41830222
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41830168 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
41830222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 8083559 - 8083505
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
T |
8083559 |
tattaaagatatagattagtagcatattagtcctagtaaagagtagtataaataa |
8083505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5447775 - 5447855
Alignment:
Q |
105 |
cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa |
185 |
Q |
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||||||||||||||||||| ||| ||||| | |||||||| || ||||| ||| | ||||||||||||||||||||||| |
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T |
5447775 |
cattgtctaaaccgacaaccagagaattatcactatgtgaatttttttacaacacatagacttctctcactctcaccccaa |
5447855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5438765 - 5438845
Alignment:
Q |
105 |
cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa |
185 |
Q |
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|
||||||||||||||||||| ||| ||||| | ||| |||| || ||||| ||| | ||||||||||||||||||||||| |
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T |
5438765 |
cattgtctaaaccgacaaccagagaattatcactatctgaatttttttacaacacatagacttctctcactctcaccccaa |
5438845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 5439762 - 5439837
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc |
182 |
Q |
|
|
||||||||||||||||| ||| ||||| | ||||||||||| ||||| ||| | ||||||| |||||||||||| |
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T |
5439762 |
ttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacacatagacttctatcactctcaccc |
5439837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 5448772 - 5448847
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc |
182 |
Q |
|
|
||||||||||||||||| ||| ||||| | ||||||||||| ||||| ||| | ||||||| |||||||||||| |
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T |
5448772 |
ttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacacatagacttctatcactctcaccc |
5448847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 31180184 - 31180240
Alignment:
Q |
242 |
tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31180184 |
tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
31180240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 24039425 - 24039480
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24039425 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
24039480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 24038231 - 24038285
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24038231 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
24038285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 31269633 - 31269579
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
T |
31269633 |
ctattagatatatagat-agtagcatattagtcctagtagagagtaatataaataa |
31269579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 7275315 - 7275260
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
7275315 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
7275260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 7277919 - 7277865
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
7277919 |
tattagagatatagattattagcatattagtcctagtagagagtagtataaataa |
7277865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 13856639 - 13856692
Alignment:
Q |
245 |
attagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
13856639 |
attagagatatagattagtggcatattagtcctagtagagagtagtataaataa |
13856692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 3567639 - 3567607
Alignment:
Q |
266 |
catattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||| |||||||||||||||||| |
|
|
T |
3567639 |
catattagtcctagcagagagtagtataaataa |
3567607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 2546987 - 2547042
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
2546987 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
2547042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 14508938 - 14508861
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccca |
184 |
Q |
|
|
||||||||||||||||| | | ||||||| |||||||| || ||||| ||| | |||||||||||||||||||||| |
|
|
T |
14508938 |
ttgtctaaaccgacaaccaaagaattattactatgtgaatttttttacaacacatagacttctctcactctcacccca |
14508861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 31327065 - 31327013
Alignment:
Q |
192 |
ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct |
244 |
Q |
|
|
|||||||||||| ||||| ||| | |||||| ||||||||||| ||||||||| |
|
|
T |
31327065 |
ctccaccataaagagtatacttaacttgaaactgaaccattctaagaatttct |
31327013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 111714 - 111660
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
111714 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
111660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 30689804 - 30689750
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
30689804 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
30689750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 31792317 - 31792354
Alignment:
Q |
260 |
tagtagcatattagtcctagtagagagtagtataaata |
297 |
Q |
|
|
||||||| |||||||||||||||| ||||||||||||| |
|
|
T |
31792317 |
tagtagcgtattagtcctagtagatagtagtataaata |
31792354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 20726627 - 20726575
Alignment:
Q |
192 |
ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct |
244 |
Q |
|
|
|||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||| |
|
|
T |
20726627 |
ctccacaataaagagtatacttcacatgaaattgaaccattctaagaatttct |
20726575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 21254116 - 21254170
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
21254116 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
21254170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 21256587 - 21256642
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
21256587 |
ctattagagatatagattagtagcatattagtcatagtagagagtagtataaataa |
21256642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 26873331 - 26873277
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
26873331 |
tattagagatatagattagtagcatattagtcctagtagagagtagtaaaaataa |
26873277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 31339309 - 31339255
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||| || || || |||||||||||||||||||||||||||||||| |
|
|
T |
31339309 |
tattagagatattgaataatattatattagtcctagtagagagtagtataaataa |
31339255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 30921529 - 30921604
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccc |
182 |
Q |
|
|
|||| |||||||||||| ||| ||||||| ||||||||||| ||| | ||| | |||||||||||||||||||| |
|
|
T |
30921529 |
ttgtttaaaccgacaacaagagaattattactatgtgaaattttttccaacacatagacttctctcactctcaccc |
30921604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 41340884 - 41340832
Alignment:
Q |
192 |
ctccaccataaacagtattcttcaattgaaattgaaccattcttagaatttct |
244 |
Q |
|
|
|||||||||||| ||||| ||||| |||||| |||||||||| ||||||||| |
|
|
T |
41340884 |
ctccaccataaagagtatacttcatttgaaactgaaccattccaagaatttct |
41340832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 18705878 - 18705824
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
18705878 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
18705824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 52022341 - 52022261
Alignment:
Q |
105 |
cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa |
185 |
Q |
|
|
||||||||||||||||||| ||| ||||||| |||||||||| ||||| ||| | ||||||||||||||||| ||||| |
|
|
T |
52022341 |
cattgtctaaaccgacaaccagaaaattattattatgtgaaatcttttacaacacatagacttctctcactctcatcccaa |
52022261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 12436186 - 12436239
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaata |
297 |
Q |
|
|
|||| ||||||||||||||| |||||||||| |||||| | ||||||||||||| |
|
|
T |
12436186 |
tattggagatatagattagtggcatattagttctagtaaatagtagtataaata |
12436239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 43635671 - 43635731
Alignment:
Q |
121 |
aactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacc |
181 |
Q |
|
|
||||||| ||||||| ||||||||||| ||||| || || ||||||||||||||||||| |
|
|
T |
43635671 |
aactagagaattattactatgtgaaattttttacaacgtatagacttctctcactctcacc |
43635731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 43835256 - 43835192
Alignment:
Q |
121 |
aactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcaccccaa |
185 |
Q |
|
|
||||||| ||||||| ||||||| || ||||| ||| || ||||||||||||||||||||||| |
|
|
T |
43835256 |
aactagagaattattactatgtgattttttttacaacacacagacttctctcactctcaccccaa |
43835192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0862 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0862
Description:
Target: scaffold0862; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 189 - 244
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
189 |
ctattagagatatagattagtagcatattagtcctagtagagaatagtataaataa |
244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 2199 - 2144
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
2199 |
ctattagagatatagattaatagcatattagtcctagtagagagtagtataaataa |
2144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 4583 - 4637
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
4583 |
tattagatatatagattagtagcatattagtcctagtagagagtagtataaataa |
4637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10018948 - 10018894
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
T |
10018948 |
tattagagatatagattagtggcatattagttctagtagagagtagtataaataa |
10018894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10256262 - 10256208
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
T |
10256262 |
tattagagatatagattagtggcatattagttctagtagagagtagtataaataa |
10256208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 8504365 - 8504319
Alignment:
Q |
252 |
atatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
T |
8504365 |
atatagattagtggcatattagtcctagtaaagagtagtataaataa |
8504319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10180145 - 10180091
Alignment:
Q |
244 |
tattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
|||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
T |
10180145 |
tattagagatatagattagtggcatattagttgtagtagagagtaatataaataa |
10180091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 17730976 - 17731052
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc |
183 |
Q |
|
|
||||||||||||||||| ||| ||||||| ||||||||||| |||| ||| | ||||||||||||||||||||| |
|
|
T |
17730976 |
ttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacacatagacttctctcactctcacccc |
17731052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 19032207 - 19032283
Alignment:
Q |
107 |
ttgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc |
183 |
Q |
|
|
||||||||||||||||| ||| ||||||| ||||||||||| |||| ||| | ||||||||||||||||||||| |
|
|
T |
19032207 |
ttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacacatagacttctctcactctcacccc |
19032283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 21344606 - 21344684
Alignment:
Q |
105 |
cattgtctaaaccgacaactagatcattattagtatgtgaaattgtttactacatactgacttctctcactctcacccc |
183 |
Q |
|
|
||||||||||||| ||||| |||| |||||||||||||||||| ||||| ||| | ||||||||| |||||||||| |
|
|
T |
21344606 |
cattgtctaaaccaacaaccagataattattagtatgtgaaatcttttacaacacataaacttctctctctctcacccc |
21344684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 611 - 666
Alignment:
Q |
243 |
ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataa |
298 |
Q |
|
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
T |
611 |
ctattagagatatagattagtgccatattaatcctagtagagagtagtataaataa |
666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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