View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_50 (Length: 297)

Name: NF1711_high_50
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_50
NF1711_high_50
[»] chr2 (1 HSPs)
chr2 (83-282)||(26377199-26377398)
[»] chr3 (2 HSPs)
chr3 (82-157)||(50063925-50064000)
chr3 (89-149)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (87-157)||(33966650-33966720)
chr1 (89-157)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (82-157)||(25101044-25101119)
chr6 (120-157)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (89-149)||(43281148-43281208)
[»] chr4 (1 HSPs)
chr4 (89-155)||(55911195-55911260)
[»] chr8 (1 HSPs)
chr8 (87-143)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (89-149)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 26377398 - 26377199
Alignment:
Q  83 ggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatccttcctactattagaaacccaaaacaa 182  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26377398 ggaatgaagtcgaagcacggtggaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatccttcctactattagaaacccaaaacaa 26377299  T
Q  183 atctttttactctagtctaagaattgcattnnnnnnnnctactatagcccatgtgtcgtctgagacgtgtacaattgacaaccaatcattttgttcttgt 282  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26377298 atctttttactctagtctaagaattgcattaaaaaaaactactatagcccatgtgtcgtcagagacgtgtacagttgacaaccaatcattttgttcttgt 26377199  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 50064000 - 50063925
Alignment:
Q  82 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 157  Q
    |||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  50064000 cggagtgaagtcgaagctcggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 50063925  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 7227212 - 7227152
Alignment:
Q  89 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 149  Q
    ||||||||||| ||| ||||||| |||| | |||||||||||  |||||| ||||||||||    
T  7227212 aagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcac 7227152  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 33966720 - 33966650
Alignment:
Q  87 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 157  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33966720 tgaagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcct 33966650  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 50204599 - 50204531
Alignment:
Q  89 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 157  Q
    ||||||||||||| | ||||||| |||| | |||| ||| || |||||||||| ||||||| |||||||    
T  50204599 aagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcct 50204531  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 25101044 - 25101119
Alignment:
Q  82 cggaatgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatcct 157  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||||| |||||||    
T  25101044 cggagtgaagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcct 25101119  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 23890001 - 23890038
Alignment:
Q  120 gtagaatcgtaagatcctacgagccagcacacgatcct 157  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  23890001 gtagaatcgtacgatcctacgagccagcactcgatcct 23890038  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 43281148 - 43281208
Alignment:
Q  89 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 149  Q
    ||||||||||| | | |||||||||||| ||||||||||||| ||||||| || |||||||    
T  43281148 aagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcac 43281208  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 55911260 - 55911195
Alignment:
Q  89 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcacacgatc 155  Q
    ||||| ||||||| | |||||||||||| |||||| |||||| |||||||||| ||||||| |||||    
T  55911260 aagtcaaagcacgattgaggtgccgtgg-atgtaggatcgtatgatcctacgaaccagcactcgatc 55911195  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 29168556 - 29168612
Alignment:
Q  87 tgaagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagc 143  Q
    ||||||||||||||||| ||||||| |||||| |||  |||||  ||||||||||||    
T  29168556 tgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagc 29168612  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 46082492 - 46082552
Alignment:
Q  89 aagtcgaagcacggtggaggtgccgtggcatgtagaatcgtaagatcctacgagccagcac 149  Q
    ||||||||||||||| ||||||| | || |  |||||||||| ||||||| ||||||||||    
T  46082492 aagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcac 46082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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