View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_52 (Length: 293)
Name: NF1711_high_52
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 47063431 - 47063166
Alignment:
| Q |
9 |
agcataggtctgattttatgtacgattgatcagaatgaaactgaaatgacaaaaataccaatacattagcatccaaatgtatattgcttgagaagatttt |
108 |
Q |
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| T |
47063431 |
agcataggtctgattttatgtacgattgatcagaatgaaactgaaatgacaaaaataccaatacattagcatccaaatgtatattgtttgagaagatttt |
47063332 |
T |
|
| Q |
109 |
ctaataaaaaagcacaacaacactgtaacaattgatgaaaactaggggagacaagagtgggaggacaagagcgtgcgtttgtgattgtgatcgtccatct |
208 |
Q |
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| T |
47063331 |
ctaataaaaaagcacaaca---ctgtaacaattgatgaaaactaggggagacaagagtgggaggacaagagtgtgcgtttgtgattgtgatcgtccatct |
47063235 |
T |
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| Q |
209 |
tattattattggatgcaaggaattgtatagagagatactgactgtgagtttgcaaggaattgaaaaata |
277 |
Q |
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| T |
47063234 |
tattattattggatgcaaggaattgtatagagagatactgaatgtgagtttgcaaggaattgaaaaata |
47063166 |
T |
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