View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_53 (Length: 291)

Name: NF1711_high_53
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_53
NF1711_high_53
[»] chr6 (2 HSPs)
chr6 (8-243)||(35091745-35091980)
chr6 (136-264)||(19228492-19228620)
[»] chr2 (4 HSPs)
chr2 (7-118)||(9259579-9259689)
chr2 (10-116)||(17139937-17140043)
chr2 (28-110)||(31392295-31392377)
chr2 (136-235)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (10-118)||(1580996-1581105)
chr3 (10-118)||(41404207-41404316)
chr3 (73-118)||(3663805-3663850)
chr3 (136-240)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (28-118)||(3290493-3290583)
chr1 (10-110)||(32984385-32984486)
chr1 (136-269)||(32984613-32984746)
[»] chr7 (6 HSPs)
chr7 (10-118)||(30464521-30464630)
chr7 (10-104)||(8160939-8161032)
chr7 (136-270)||(30464268-30464402)
chr7 (10-118)||(39827621-39827730)
chr7 (138-275)||(8160673-8160810)
chr7 (136-242)||(39827396-39827502)
[»] chr5 (1 HSPs)
chr5 (180-270)||(12892989-12893079)
[»] chr8 (1 HSPs)
chr8 (72-118)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 35091980 - 35091745
Alignment:
Q  8 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  108 ttgacgtctcaatcnnnnnnntcactgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaac 207  Q
    ||||||||||||||       |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataacaac 35091781  T
Q  208 ccctaaaatcatctatgtttagttttctcttttctc 243  Q
     |||||||||||||||||||||||||||||||||||    
T  35091780 tcctaaaatcatctatgtttagttttctcttttctc 35091745  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 19228492 - 19228620
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||| |||||||||| | ||||||| ||| ||||  ||| |||||||| |||||||||| |  ||||  ||||||| | |||||| |||||| ||||||    
T  19228492 gttgcgtgtgtatgagcaatgtccaactaggcttagttctctggtgttagctgatgttatgggaataatgacccctagattcatctctgtttaattttct 19228591  T
Q  236 cttttctcatacttaggtctctttgtttc 264  Q
    ||||||||   |||||| |||||||||||    
T  19228592 cttttctcgagcttaggcctctttgtttc 19228620  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  7 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 106  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  107 gttgacgtctca 118  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  10 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  109 tgacgtct 116  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  28 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 110  Q
    ||||| |||||||||||||| |  ||||| ||||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 39809469 - 39809568
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||| ||||||||||||||||| | |||| ||||  | |  |||||||||| ||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39809469 gttgcgtgtgtatgagtagtgtctagttaggcttagttatccggtgttaactaatgttatggggatagcgacccctagagtcatctctgtttagttttct 39809568  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  10 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  109 tgacgtctca 118  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  10 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  109 tgacgtctca 118  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  73 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 118  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 41404089 - 41403985
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||||||||||||| |||||||||  ||||||||  ||| |||||||| || |||||||   |||| | || |||| | || ||| ||| |||||||||    
T  41404089 gttgcatgtgtatgactagtgtccagctagacttagttctctggtgttagcttatgttatgtggatagcgactcctagagtcgtctctgtctagttttct 41403990  T
Q  236 ctttt 240  Q
    |||||    
T  41403989 ctttt 41403985  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  28 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 118  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  10 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    |||||||||| |||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  109 tg 110  Q
    ||    
T  32984485 tg 32984486  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 32984613 - 32984746
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||| |||||||||| | ||||||  ||| ||||  ||| ||||||||  ||||||||| | |||| ||||||||| | |||||| |||||| ||||||    
T  32984613 gttgcgtgtgtatgagcaatgtccagctaggcttagttctctggtgttagttgatgttatggggatagcaacccctagagtcatctctgtttaattttct 32984712  T
Q  236 cttttctcatacttaggtctctttgtttcccaaa 269  Q
    ||||| ||   |||| | | ||||||||||||||    
T  32984713 cttttttcgggcttaagcccctttgtttcccaaa 32984746  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  10 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  109 tgacgtctca 118  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  10 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 104  Q
    |||| |||||||||||  ||||| || |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 30464402 - 30464268
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||| |||||||||||||||||||  ||| ||||  ||| |||||||| |||||||||| | |||| | ||||||||| |||||| |||||  ||||||    
T  30464402 gttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttagctgatgttatggggatagcgacccctaaagtcatctttgtttgattttct 30464303  T
Q  236 cttttctcatacttaggtctctttgtttcccaaaa 270  Q
    ||||||||   |||||| | ||||||||| |||||    
T  30464302 cttttctcgagcttaggcccctttgtttctcaaaa 30464268  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  10 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 108  Q
    ||||||||||||||| ||||| || || |||||||| || || ||||||||||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  109 tgacgtctca 118  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 8160810 - 8160673
Alignment:
Q  138 tgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctct 237  Q
    ||||||||| |||| ||||||||  ||  ||||  ||| |||||||| |||||||||| | ||||   ||||||| | |||||| | |||||||||||||    
T  8160810 tgcatgtgtctgagcagtgtccagctaagcttagttctctggtgttagctgatgttatggggatagtgacccctagagtcatctctatttagttttctct 8160711  T
Q  238 tttctcatacttaggtctctttgtttcccaaaataaat 275  Q
    |||||| | |||||| | ||||||||||||||| ||||    
T  8160710 tttctcgtgcttaggcccctttgtttcccaaaagaaat 8160673  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 39827502 - 39827396
Alignment:
Q  136 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 235  Q
    ||||| |||||||||| |||||| || ||||||||  | | || |||||  ||||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39827502 gttgcgtgtgtatgagcagtgtcaaactagacttagttatctgatgttagttgatgttatagggatagcgacccctagagtcatctctgtttagttttct 39827403  T
Q  236 cttttct 242  Q
     ||||||    
T  39827402 tttttct 39827396  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 12893079 - 12892989
Alignment:
Q  180 tgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctcttttctcatacttaggtctctttgtttcccaaaa 270  Q
    ||||| |||||||||| | |||||| ||| ||||| || ||| | |||||||||||| |||||||  |||||||| |||||||||| ||||    
T  12893079 tgttagctgatgttatggggataacgacctctaaagtcgtctctatttagttttctcctttctcaagcttaggtccctttgtttccaaaaa 12892989  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 12735515 - 12735469
Alignment:
Q  72 taccctgcagacaactaaggatggaagtgttgttggttgacgtctca 118  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctca 12735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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