View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_high_54 (Length: 290)
Name: NF1711_high_54
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_54 |
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[»] scaffold0525 (1 HSPs) |
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[»] scaffold0862 (1 HSPs) |
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[»] scaffold0023 (1 HSPs) |
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[»] scaffold0251 (1 HSPs) |
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[»] scaffold0001 (2 HSPs) |
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[»] scaffold0655 (1 HSPs) |
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[»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41830199 - 41830408
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||| |||| |
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|
T |
41830199 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattcaatttacatcaatagaaagagtttcttag |
41830298 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga |
200 |
Q |
|
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41830299 |
ttttctctcattccttccatggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga |
41830398 |
T |
|
Q |
201 |
gaaaatccaa |
210 |
Q |
|
|
|||||||||| |
|
|
T |
41830399 |
gaaaatccaa |
41830408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41832605 - 41832745
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||| |
|
|
T |
41832605 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaattttcatcaatagaaagagtttcttag |
41832704 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
|||||||||||||||||| ||||| ||||||||||||||| |
|
|
T |
41832705 |
ttttctctcattccttccatggatgccatgtttcctaacat |
41832745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8083528 - 8083389
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||| |||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
T |
8083528 |
cctagtaaagagtagtataaataacttctaaccaccccattagagggaacttttgtcattttgtaatatttcattttcatcaatagaaagagttttttag |
8083429 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||| |||||||| ||||| |||||||||||||| |
|
|
T |
8083428 |
ttttctctccttccttccatggatgccatgtttcctaaca |
8083389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 34510814 - 34510898
Alignment:
Q |
120 |
tggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
T |
34510814 |
tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaagga-attttccgctgcattttctc-gagaaaat |
34510898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 36647528 - 36647433
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcatttt |
194 |
Q |
|
|
||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
T |
36647528 |
agttttctctcattctttcattggatatcatgttttctaatatggtatcagagctaatctggtattcatcttgaaggatattttccgctgcatttt |
36647433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 7737387 - 7737449
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||||| | | ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
7737387 |
catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca |
7737449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25432065 - 25432205
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttt-tctcattttgtaatattccatttccatcaattgaaag-agtttttt |
98 |
Q |
|
|
|||| |||| |||| |||||||| |||||||||||||||||| ||| ||||| |||| || ||||||||| |||||||||||| |||| | ||| | |
|
|
T |
25432065 |
cctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca-ttcgtaatattcaatttccatcaatataaagaactttgct |
25432163 |
T |
|
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
| ||||||||||||||||| ||||| |||||||| ||||| |
|
|
T |
25432164 |
acatttctctcattccttccatggatgccatgtttcataaca |
25432205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 35130642 - 35130683
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
35130642 |
agttttctctcattccttcattggatatcatgtttcctaaca |
35130683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 23613779 - 23613827
Alignment:
Q |
60 |
tttgtaatattccatttccatcaattgaaagagttttttagttttctct |
108 |
Q |
|
|
||||||||||| ||||||||||||| ||||||||| |||||||||||| |
|
|
T |
23613779 |
tttgtaatatttcatttccatcaataaaaagagtttgttagttttctct |
23613827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 23613667 - 23613766
Alignment:
Q |
3 |
tagtagagagtagtataaataatttgtaaccaccccattagagggtactttt--ctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||| |||||||||||| |||||||||||| ||||| ||| | ||| |||| ||||||||||| ||||||||||||| ||||||||| |||| |
|
|
T |
23613667 |
tagtagattgtagtataaatagtttgtaaccacctaattagtgggaaactttcactca-tttgtaatatttcatttccatcaataaaaagagtttgttag |
23613765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 48821896 - 48821855
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
T |
48821896 |
agttttctctcatttcttccatggatatcatgtttcataaca |
48821855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24038262 - 24038471
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| |
|
|
T |
24038262 |
cctagtagagagtagtataaataacttgtaaccactccattagagggcacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttag |
24038361 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctga |
200 |
Q |
|
|
|||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24038362 |
ttttctctcattccttccatggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggatattttccgctgcattttctctga |
24038461 |
T |
|
Q |
201 |
gaaaatccaa |
210 |
Q |
|
|
|||||||||| |
|
|
T |
24038462 |
gaaaatccaa |
24038471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31269602 - 31269462
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |
|
|
T |
31269602 |
cctagtagagagtaatataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattcaatttccatcaatagaaagagtttcttag |
31269503 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
||||||||| |||||||| ||||| ||||||||||||||| |
|
|
T |
31269502 |
ttttctctccttccttccatggatgccatgtttcctaacat |
31269462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31180217 - 31180355
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
T |
31180217 |
cctagtagagagtagtataaataacttctaaccaccccattagaggg-acttttctcattttgtaatattccatttccatcaatagaaagagtttcttag |
31180315 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||| |||||||| ||||| |||| ||||||||| |
|
|
T |
31180316 |
ttttctctccttccttccatggatgccatgcttcctaaca |
31180355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24039457 - 24039596
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| |
|
|
T |
24039457 |
cctagtagagagtagtataaataacttgtaaccacctcattagagggcacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttag |
24039556 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||| ||||| ||||||| |||||| |
|
|
T |
24039557 |
ttttctctcattccttccatggatgccatgttttctaaca |
24039596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 36402811 - 36402684
Alignment:
Q |
13 |
tagtataaataatttgtaaccaccccattagagggtactttt--ctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctca |
110 |
Q |
|
|
||||||||||| ||||||||||||||||||| ||||| ||| |||| |||||||||||| |||||||||||| |||||| ||| ||| |||||||| |
|
|
T |
36402811 |
tagtataaatagtttgtaaccaccccattagtgggtaactttcactca-tttgtaatattctatttccatcaatacaaagag-tttgtagatttctctcc |
36402714 |
T |
|
Q |
111 |
ttccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||| |||| ||||||||||||||| ||||| |
|
|
T |
36402713 |
ttcattccatggatatcatgtttcataaca |
36402684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 36316325 - 36316272
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc |
152 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
36316325 |
agttttctctcattccttcattggatatcatgtttcctaatatggtatcagagc |
36316272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 18705847 - 18705652
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||| |||| |
|
|
T |
18705847 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattctattttcatcaatagaaagagtttcttag |
18705748 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct |
196 |
Q |
|
|
||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
T |
18705747 |
ttttctctccttcctttcatggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaaggattttttccgctgcattttct |
18705652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 9908242 - 9908117
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggat |
177 |
Q |
|
|
||||||| ||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
T |
9908242 |
catcaatacaaagattatttgagttttctctcattccttgt-tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaa-gaa |
9908145 |
T |
|
Q |
178 |
attttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
||||||||||||| ||||| ||||||||| |
|
|
T |
9908144 |
attttccgctgcactttct-tgagaaaat |
9908117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 20226831 - 20226757
Alignment:
Q |
129 |
tgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
20226831 |
tgtttcctaacatggtatcagagctaatctggtatcctccttgaagg--attttccgctgcattttct-tgagaaaat |
20226757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 35270117 - 35270047
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagc-taacttggtatccaccttgaaggatattttccgctgcattttct |
196 |
Q |
|
|
||||||| ||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||| |
|
|
T |
35270117 |
catgttttataacatggtatcagagcctggtttggcatccaccttgaatgatattttccgctgcattttct |
35270047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 41418180 - 41418223
Alignment:
Q |
97 |
ttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||| |||||||| ||||||||||||||||||||| |
|
|
T |
41418180 |
ttagttttctctaattccttcattggatatcatgtttcctaaca |
41418223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 29850000 - 29849953
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaagga |
176 |
Q |
|
|
|||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
T |
29850000 |
catgtttcataacatggtatcagagcaaa--tggtatccaccttgaagga |
29849953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 50038691 - 50038728
Alignment:
Q |
161 |
tatccaccttgaaggatattttccgctgcattttctct |
198 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||| |
|
|
T |
50038691 |
tatccaccttgaaggatattttttgctgcattttctct |
50038728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 7277888 - 7277693
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
T |
7277888 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag |
7277789 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc |
197 |
Q |
|
|
||||||||| ||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
T |
7277788 |
ttttctctccttctttccatggataccatgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttctc |
7277693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7275283 - 7275143
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
T |
7275283 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag |
7275184 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
||||||||| ||| || | |||||| ||||||||||||||| |
|
|
T |
7275183 |
ttttctctccttcttttcatggataccatgtttcctaacat |
7275143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 4676256 - 4676364
Alignment:
Q |
97 |
ttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggata-ttttccgctgcattttc |
195 |
Q |
|
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
4676256 |
ttagttttctctcattccttc-gtggatatcatgtttcctaatatggtatcagagctaacctggtatccaccttgaaggatatttttccgctgcattttc |
4676354 |
T |
|
Q |
196 |
tctgagaaaat |
206 |
Q |
|
|
| ||||||||| |
|
|
T |
4676355 |
t-tgagaaaat |
4676364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 13856669 - 13856821
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttt |
98 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| |||||| |||| ||| || |
|
|
T |
13856669 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggttactttcactcattt-gtagtattccatttctatcaatacaaagtgttcgtt |
13856767 |
T |
|
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc |
152 |
Q |
|
|
||||||||||| ||| |||| ||||| ||||||||| ||||||||||||||||| |
|
|
T |
13856768 |
agttttctctccttctttccatggatgtcatgtttcataacatggtatcagagc |
13856821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3567630 - 3567495
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagaggg-tactttt---ctcattttgtaatattccatttccatcaattgaaagagtttt |
96 |
Q |
|
|
||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| ||||||| ||||||||| |
|
|
T |
3567630 |
cctagcagagagtagtataaataacctgtaaccaccctattagagggatactttttcactcattt-gtaatattccattttcatcaatacaaagagtttg |
3567532 |
T |
|
Q |
97 |
ttagttttctctcattccttccgtggatatcatgttt |
133 |
Q |
|
|
|||| ||||| || |||||||| |||| |||||||| |
|
|
T |
3567531 |
ttagatttctttccttccttccacggatgtcatgttt |
3567495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 26174363 - 26174437
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaa |
173 |
Q |
|
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| | || |||||||||||||||| |
|
|
T |
26174363 |
agttttctctcattccttccttggatatcatgtttactaacatggtatcagaacaaatatggtatccaccttgaa |
26174437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 39327 - 39402
Alignment:
Q |
131 |
tttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatc |
207 |
Q |
|
|
|||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
39327 |
tttcttaacatgatatcagagctaatccgatatccaccttgaaggatattttccgctgcattttctc-gagaaaatc |
39402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 3788513 - 3788434
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
|||||||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||| | ||||||||| |
|
|
T |
3788513 |
catgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcattttttttgagaaaat |
3788434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 4678201 - 4678243
Alignment:
Q |
97 |
ttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
4678201 |
ttagttttctctcattccttc-gtggatatcatgtttcctaaca |
4678243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 35416102 - 35416056
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaa |
173 |
Q |
|
|
|||||||| ||||||||||||||||| | ||||||||||||||||| |
|
|
T |
35416102 |
catgtttcttaacatggtatcagagcataattggtatccaccttgaa |
35416056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 8655964 - 8655763
Alignment:
Q |
3 |
tagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttagtt |
102 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
T |
8655964 |
tagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttccatcaatagaaagagtttcttagtt |
8655865 |
T |
|
Q |
103 |
ttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgaga |
202 |
Q |
|
|
||||||| ||||||| ||||| ||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||| ||||||||||| |||| |
|
|
T |
8655864 |
ttctctccttccttctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaagg--attttcccttgcattttctc-gaga |
8655768 |
T |
|
Q |
203 |
aaatc |
207 |
Q |
|
|
||||| |
|
|
T |
8655767 |
aaatc |
8655763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 30689773 - 30689634
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||| |||| |
|
|
T |
30689773 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatatttcactttcatcaatagaaagagtttcttag |
30689674 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||| | ||||| |||||||||||||| |
|
|
T |
30689673 |
ttttctctcattcctttcatggatgccatgtttcctaaca |
30689634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 6825597 - 6825444
Alignment:
Q |
51 |
ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcaga |
150 |
Q |
|
|
||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||| |||||||| ||||| |||||||||||||||||||| ||| |
|
|
T |
6825597 |
ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaacatggtattaga |
6825498 |
T |
|
Q |
151 |
gctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
|| ||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
T |
6825497 |
gcatgattggtatccaccttgaacaat-ttttccgctgcattttctc-gagaaaat |
6825444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 24249778 - 24249910
Alignment:
Q |
60 |
tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttg |
159 |
Q |
|
|
||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| || | | ||| ||||||||||||||||||||||||||||| || |
|
|
T |
24249778 |
tttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaacatggtatcagagctaatctg |
24249877 |
T |
|
Q |
160 |
gtatccaccttgaaggatattttccgctgcatttt |
194 |
Q |
|
|
|||||||||| |||| |||||| |||||||||| |
|
|
T |
24249878 |
atatccacctttaagg--attttctgctgcatttt |
24249910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 787424 - 787494
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc |
197 |
Q |
|
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
T |
787424 |
catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttctc |
787494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 23343903 - 23343998
Alignment:
Q |
97 |
ttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct |
196 |
Q |
|
|
||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
23343903 |
ttagttttctctcattccttcattggatataatgtttc--aacatggtatcagag--aacctggtatccaccttgaaggatattttccgctgcactttct |
23343998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 6823124 - 6823035
Alignment:
Q |
51 |
ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||| |||||||| || || |||||||| |||||| |
|
|
T |
6823124 |
ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatgaatgtcatgttttctaaca |
6823035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 6860209 - 6860250
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
T |
6860209 |
agttttctctcattccttccttggatatcatgtttactaaca |
6860250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 8837191 - 8837152
Alignment:
Q |
167 |
ccttgaaggatattttccgctgcattttctctgagaaaatc |
207 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
8837191 |
ccttgaaggatattttccgctgcattttctc-gagaaaatc |
8837152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 14618775 - 14618732
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaacatg |
142 |
Q |
|
|
|||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
T |
14618775 |
agttttctttcattccttccttggatatcatgtttactaacatg |
14618732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 1136309 - 1136235
Alignment:
Q |
60 |
tttgtaatattccatttccatcaattgaaagagttttt-tagttttctctcattccttccgtggatatcatgttt |
133 |
Q |
|
|
|||||||||||| |||||||||||| |||||| ||| || ||||||||||||||||| ||||| |||||||| |
|
|
T |
1136309 |
tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattccttccatggatgtcatgttt |
1136235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 21254147 - 21254342
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||| ||| |
|
|
T |
21254147 |
cctagtagagagtagtataaataacttgtaaccgccccattagagggaacttttctcattttgtaatattcctttttcatcaatagaaagagtttgttac |
21254246 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc |
197 |
Q |
|
|
||||||||| |||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
T |
21254247 |
ttttctctccttccttccatggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaacaat-ttttccgctgcattttctc |
21254342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 21256621 - 21256758
Alignment:
Q |
3 |
tagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttagtt |
102 |
Q |
|
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
|
|
T |
21256621 |
tagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttgttagtt |
21256720 |
T |
|
Q |
103 |
ttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||||||| ||||| |||||||||||||| |
|
|
T |
21256721 |
ttctctccttccttccatggatgccatgtttcctaaca |
21256758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26873300 - 26873149
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||||||||||||| |||||| |||||| || |||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
T |
26873300 |
cctagtagagagtagtaaaaataacttgtaatcattccattagaggaaacttttctcatttcgtaatattctatttccatcaatagaaagagtttcttag |
26873201 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagc |
152 |
Q |
|
|
||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
T |
26873200 |
ttttctctccttccttccatggatgccatgtttcctaacatggtatcagagc |
26873149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 35309181 - 35309081
Alignment:
Q |
106 |
tctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaa |
205 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
T |
35309181 |
tctcattccttcattggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaaggatattttccgctgcattttttttgagaaaa |
35309082 |
T |
|
Q |
206 |
t |
206 |
Q |
|
|
| |
|
|
T |
35309081 |
t |
35309081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31339278 - 31339166
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttccatcaattgaaagagtttttta |
99 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||| |||| | || ||||||||||||||||| ||||||||| || |||||||||| ||| |
|
|
T |
31339278 |
cctagtagagagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaatattcaatttccatcgatagaaagagtttctta |
31339179 |
T |
|
Q |
100 |
gttttctctcatt |
112 |
Q |
|
|
||||||||||||| |
|
|
T |
31339178 |
gttttctctcatt |
31339166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 41951768 - 41951665
Alignment:
Q |
103 |
ttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgaga |
202 |
Q |
|
|
|||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
T |
41951768 |
ttctctcattccttccatggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaaggatattttccgctgcattttctc-gaga |
41951670 |
T |
|
Q |
203 |
aaatc |
207 |
Q |
|
|
||||| |
|
|
T |
41951669 |
aaatc |
41951665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30518739 - 30518616
Alignment:
Q |
86 |
gaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccg |
185 |
Q |
|
|
|||||| ||||| |||||||||| ||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||| || ||||||||||| |
|
|
T |
30518739 |
gaaagattttttgagttttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccg |
30518640 |
T |
|
Q |
186 |
ctgcattttctctgagaaaatccaa |
210 |
Q |
|
|
||||||||||| ||||||||||||| |
|
|
T |
30518639 |
ctgcattttct-tgagaaaatccaa |
30518616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30559079 - 30558956
Alignment:
Q |
86 |
gaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccg |
185 |
Q |
|
|
|||||| ||||| |||||||||| ||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||| || ||||||||||| |
|
|
T |
30559079 |
gaaagattttttgagttttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccg |
30558980 |
T |
|
Q |
186 |
ctgcattttctctgagaaaatccaa |
210 |
Q |
|
|
||||||||||| ||||||||||||| |
|
|
T |
30558979 |
ctgcattttct-tgagaaaatccaa |
30558956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 43233901 - 43233963
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
T |
43233901 |
catcaatagaaagattctttgagttttctctcattccttccatggatgccatgtttcctaaca |
43233963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 27405347 - 27405306
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
27405347 |
agttttctctcattccttcattggatatcatgtttcctaaca |
27405306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 4730657 - 4730701
Alignment:
Q |
56 |
tcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
T |
4730657 |
tcattttgtaatattccatttccatcaatacaaagagtttgttag |
4730701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 39040581 - 39040538
Alignment:
Q |
97 |
ttagttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
39040581 |
ttagttttctctcattccttt-gtggatatcatgtttcctaacat |
39040538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 31186032 - 31185993
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaa |
138 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
31186032 |
agttttctctcattccttcgttggatatcatgtttcctaa |
31185993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15531527 - 15531461
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttt-tctcattttgtaa |
66 |
Q |
|
|
|||| |||| |||| |||||||| ||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
T |
15531527 |
cctaatagatagtactataaatagtttgtaaccaccccattagtgggaactttcactcattttgtaa |
15531461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25213866 - 25213907
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||| || ||||||||||||||||||||| |
|
|
T |
25213866 |
agttttctctcattccctcattggatatcatgtttcctaaca |
25213907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25278016 - 25278057
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||| || ||||||||||||||||||||| |
|
|
T |
25278016 |
agttttctctcattccctcattggatatcatgtttcctaaca |
25278057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2167 - 2028
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
T |
2167 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttccatcaatagaaagagtttcttag |
2068 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||| |||||||| ||||| ||||||||| |||| |
|
|
T |
2067 |
ttttctctccttccttccatggatgccatgtttcccaaca |
2028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 2547019 - 2547158
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
|
|
T |
2547019 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttctatcaatacaaagagtttgttag |
2547118 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||| |||||||| ||||| ||||||||||||||| |
|
|
T |
2547119 |
atttctctccttccttccatggatgtcatgtttcctaaca |
2547158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 5440951 - 5441033
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatccaa |
210 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||| |
|
|
T |
5440951 |
catgtttcctaacatggtatcagagctaacctggtatccattttgaaggatattttcccctgcattttctc-gagaaaatccaa |
5441033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 55852005 - 55851923
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatccaa |
210 |
Q |
|
|
||||||||||||||| |||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
T |
55852005 |
catgtttcctaacatcgtatcagagcaagattggtatccacctcgaatgatattttccgctgcattttct-agagaaaatccaa |
55851923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 20880177 - 20880038
Alignment:
Q |
2 |
ctagtagagagtagtataaataatttgtaaccaccccattagaggg-tacttttc-tcattttgtaatattccatttccatcaattgaaagagtttttta |
99 |
Q |
|
|
|||||||| |||||||||||||| |||||||||||||||||| ||| |||| || ||| ||||||| ||| ||| ||| ||| |||||||| ||| |
|
|
T |
20880177 |
ctagtagacagtagtataaataacttgtaaccaccccattagtgggatactgctcatca-tttgtaactttctattctcattaatacaaagagttagtta |
20880079 |
T |
|
Q |
100 |
gttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||| ||||||||||| ||| ||||| |
|
|
T |
20880078 |
cttttctctcattccttccatggatatcatgcttcataaca |
20880038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 27510545 - 27510483
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||||| | | ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
27510545 |
catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca |
27510483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 5444744 - 5444859
Alignment:
Q |
26 |
ttgtaaccaccccattagagggta-cttttctcattttgtaatattccatttccatcaattgaaagagttttttag-ttttctctcattccttccgtgga |
123 |
Q |
|
|
||||||||||| ||||||| |||| || || |||||| ||||||||||||||| |||||| ||||||||| |||| ||||| ||| ||| |||| | || |
|
|
T |
5444744 |
ttgtaaccacctcattagaaggtatctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgttagtttttccctccttctttccataga |
5444842 |
T |
|
Q |
124 |
tatcatgtttcctaaca |
140 |
Q |
|
|
| |||||||||||||| |
|
|
T |
5444843 |
tgccatgtttcctaaca |
5444859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 35783779 - 35783859
Alignment:
Q |
60 |
tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||| |||||| ||||||||| |||||||| ||| ||| |||| ||||| |||||||| ||||| |
|
|
T |
35783779 |
tttgtaatattccatttcaatcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca |
35783859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0862 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0862
Description:
Target: scaffold0862; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 221 - 361
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
T |
221 |
cctagtagagaatagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccattttcatcaatagaaagagtttcttag |
320 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
||||||||| |||||| | ||||| ||||||||||||||| |
|
|
T |
321 |
ttttctctccttcctttcatggatgccatgtttcctaacat |
361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 111683 - 111544
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||| |
|
|
T |
111683 |
cctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatattccatttaaatcaataaaaagagtttattaa |
111584 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||| |||||||| ||||| |||||||||||||| |
|
|
T |
111583 |
atttctctccttccttccatggatgccatgtttcctaaca |
111544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4614 - 4719
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||| |||| |
|
|
T |
4614 |
cctagtagagagtagtataaataatttgtaaccaccctattagagggaactttttccattttgtaatatttcattttcatcaatagaaagagtttcttag |
4713 |
T |
|
Q |
101 |
ttttct |
106 |
Q |
|
|
|||||| |
|
|
T |
4714 |
ttttct |
4719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 52737847 - 52737764
Alignment:
Q |
122 |
gatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
52737847 |
gatatcatgtttcctaacatggtatcagagcaaatctggtatccaccttgaaggatattttccgctgcattttct-tgagaaaat |
52737764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 19954580 - 19954439
Alignment:
Q |
12 |
gtagtataaataatttgtaaccaccccattagagggtacttttc--tcattttgtaatattccatttccatcaattgaaagagttttttagttttctctc |
109 |
Q |
|
|
|||||||||||| |||||||| ||| |||||| ||||| |||| |||||| ||| |||||||||||||||||| |||||| || |||| |||||||| |
|
|
T |
19954580 |
gtagtataaatagtttgtaacaacctcattagtgggtaactttcactcattt-gtattattccatttccatcaatacaaagagattgttagatttctctc |
19954482 |
T |
|
Q |
110 |
attccttccgtggatatcatgtttcctaacatggtatcagagc |
152 |
Q |
|
|
|||||||| ||||| ||||||||| ||||||||||||||||| |
|
|
T |
19954481 |
cttccttccatggatgtcatgtttcataacatggtatcagagc |
19954439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 10180112 - 10179974
Alignment:
Q |
3 |
tagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagttttttag |
100 |
Q |
|
|
|||||||||||| ||||||||| |||||| || || |||||||||| ||||| ||||||| |||||||| ||||||||||||| ||||||||| |||| |
|
|
T |
10180112 |
tagtagagagtaatataaataacttgtaatcatcctattagagggttactttcactcattt-gtaatatttcatttccatcaatacaaagagtttgttag |
10180014 |
T |
|
Q |
101 |
ttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||| ||| || | ||||| ||||||||||||||| |
|
|
T |
10180013 |
ttttctctccttcttttcatggatgtcatgtttcctaaca |
10179974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10018916 - 10018777
Alignment:
Q |
2 |
ctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttta |
99 |
Q |
|
|
||||||||||||||||||||||| |||||| |||| |||||| ||| |||| ||||||| |||||||| ||||||||||||| ||||||||| ||| |
|
|
T |
10018916 |
ctagtagagagtagtataaataacttgtaatcaccttattagatggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgtta |
10018818 |
T |
|
Q |
100 |
gttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||| ||| |||| ||||| |||||||||||||| |
|
|
T |
10018817 |
gttttctctccttctttccatggatgccatgtttcctaaca |
10018777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10256230 - 10256091
Alignment:
Q |
2 |
ctagtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagtttttta |
99 |
Q |
|
|
||||||||||||||||||||||| ||||||||||| |||||| ||| |||| ||||||| |||||||| ||||||||||||| ||| ||||| ||| |
|
|
T |
10256230 |
ctagtagagagtagtataaataacttgtaaccaccttattagatggttacttccactcattt-gtaatatttcatttccatcaatacaaaaagtttgtta |
10256132 |
T |
|
Q |
100 |
gttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||| ||| |||| ||||| |||||||||||||| |
|
|
T |
10256131 |
gttttctctccttctttccatggatgccatgtttcctaaca |
10256091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 10123454 - 10123317
Alignment:
Q |
4 |
agtagagagtagtataaataatttgtaaccaccccattagagggt-actttt-ctcattttgtaatattccatttccatcaattgaaagagttttttagt |
101 |
Q |
|
|
|||||| |||||||||||||| ||||||||||| |||||||||| |||| ||||||| |||||||| ||||||||||||| ||||||||| ||||| |
|
|
T |
10123454 |
agtagaaagtagtataaataacttgtaaccaccttattagagggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgttagt |
10123356 |
T |
|
Q |
102 |
tttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||| ||| || | ||||| |||||||||||||| |
|
|
T |
10123355 |
tttctctccttcttttcatggatgccatgtttcctaaca |
10123317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 782918 - 782838
Alignment:
Q |
60 |
tttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||| |||||| ||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||| |
|
|
T |
782918 |
tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca |
782838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 4602399 - 4602469
Alignment:
Q |
136 |
taacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaatc |
207 |
Q |
|
|
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
4602399 |
taacatggtatcagagctaacctagtatccaccttgaaggaatttttccgctgcattttctc-gagaaaatc |
4602469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 10661871 - 10661756
Alignment:
Q |
26 |
ttgtaaccaccccattagaggg-tactttt-ctcattttgtaatattccattt-ccatcaattgaaagagttttttagttttctctcattccttccgtgg |
122 |
Q |
|
|
|||||||||||||||||| ||| |||||| ||||||| |||||||||||||| |||| | | ||||||||| ||||||||||||||||| |||| ||| |
|
|
T |
10661871 |
ttgtaaccaccccattagtgggatactttcactcattt-gtaatattccattttccat-actacaaagagtttgttagttttctctcattctttccatgg |
10661774 |
T |
|
Q |
123 |
atatcatgtttcctaaca |
140 |
Q |
|
|
|| ||||||||||||||| |
|
|
T |
10661773 |
atgtcatgtttcctaaca |
10661756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8504342 - 8504202
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttc-catcaattgaaagagtttttt |
98 |
Q |
|
|
||||||| |||||||||||||||| ||||||| ||| |||||||||| | || ||||||| || |||||| ||| ||||||| ||||| | ||| |
|
|
T |
8504342 |
cctagtaaagagtagtataaataacttgtaacaaccaaattagagggtcaattcactcattt-gtgatattcactttatcatcaatagaaagcttatttg |
8504244 |
T |
|
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
|||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
T |
8504243 |
agttttctctcattccttccatggatttcatgattcctaaca |
8504202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 51306479 - 51306556
Alignment:
Q |
120 |
tggatatcatgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttctc |
197 |
Q |
|
|
||||| ||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
T |
51306479 |
tggatgtcatgtttctcaacatggtatcagagcatgattggtatccaccttgaacaattttttccgctgcattttctc |
51306556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 27825755 - 27825691
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatg |
142 |
Q |
|
|
||||||| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
27825755 |
catcaatacaaagattatttgagttttctctcattccttcattggatatcatgtttcctaacatg |
27825691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 33785865 - 33785928
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacat |
141 |
Q |
|
|
||||||| ||||| | ||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
33785865 |
catcaatacaaagattgtttgagttttctctcattccttcattggatatcatgtttcctaacat |
33785928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 10511141 - 10511027
Alignment:
Q |
26 |
ttgtaaccaccccattagaggg-tacttttc-tcattttgtaatattccattt-ccatcaattgaaagagttttttagttttctctcattccttccgtgg |
122 |
Q |
|
|
|||||||||||||||||| ||| |||||| | |||||| |||||||||||||| |||| ||| ||||||||| ||||||||||||||||| |||| | | |
|
|
T |
10511141 |
ttgtaaccaccccattagtgggatactttccctcattt-gtaatattccattttccat-aatacaaagagtttgttagttttctctcattctttccatag |
10511044 |
T |
|
Q |
123 |
atatcatgtttcctaaca |
140 |
Q |
|
|
|| |||||||||||||| |
|
|
T |
10511043 |
at-gcatgtttcctaaca |
10511027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 20868834 - 20868902
Alignment:
Q |
127 |
catgtttcctaacatggtatcagagctaacttggtatccaccttgaaggatattttccgctgcattttct |
196 |
Q |
|
|
||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
T |
20868834 |
catgtttcccaacatggtatcagagcatgattggtatccaccttgaaaca-attttccgctgcattttct |
20868902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 35610925 - 35610966
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
35610925 |
agttttctctcattccttcattggatatcatgtttcctaaca |
35610966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 19439567 - 19439601
Alignment:
Q |
99 |
agttttctctcattccttccgtggatatcatgttt |
133 |
Q |
|
|
|||||||||||||||||||| |||||||||||||| |
|
|
T |
19439567 |
agttttctctcattccttccttggatatcatgttt |
19439601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 39091391 - 39091329
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||| | | ||| ||||||||||||||||||| ||||||||||||||| ||||| |
|
|
T |
39091391 |
catcaatagaaatattatttgagttttctctcattccttcattggatatcatgtttcataaca |
39091329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 146809 - 146656
Alignment:
Q |
51 |
ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaacatggtatcaga |
150 |
Q |
|
|
||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||| ||||||| | ||| |||||||||||||||||||||| | |
|
|
T |
146809 |
ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaacatggtatcaaa |
146710 |
T |
|
Q |
151 |
gctaacttggtatccaccttgaaggatattttccgctgcattttctctgagaaaat |
206 |
Q |
|
|
|| ||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
T |
146709 |
gcatgattggtatccaccttgaacaat-ttttccgctgcattttctc-gagaaaat |
146656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 144750 - 144661
Alignment:
Q |
51 |
ttttctcattttgtaatattccatttccatcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||| |||||||| | ||| |||||||||||||| |
|
|
T |
144750 |
ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaaca |
144661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 643 - 782
Alignment:
Q |
1 |
cctagtagagagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatattccatttccatcaattgaaagag-tttttt |
98 |
Q |
|
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||| |||||||| |||||||||||| |||||| ||| | |
|
|
T |
643 |
cctagtagagagtagtataaataacttgtatccaccccattagagggtgacttcactcatttt-taatattcaatttccatcaatacaaagagctttact |
741 |
T |
|
Q |
99 |
agttttctctcattccttccgtggatatcatgtttcctaac |
139 |
Q |
|
|
| ||||||||||||||||| |||| ||||||||||||| |
|
|
T |
742 |
acttttctctcattccttcgacggatgccatgtttcctaac |
782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 22986 - 23048
Alignment:
Q |
78 |
catcaattgaaagagttttttagttttctctcattccttccgtggatatcatgtttcctaaca |
140 |
Q |
|
|
||||||| |||| | | ||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
22986 |
catcaatagaaatattatttgagttttctctcattccttcattggatatcatgtttcctaaca |
23048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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