View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_56 (Length: 283)
Name: NF1711_high_56
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_56 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 42144791 - 42144527
Alignment:
| Q |
19 |
ttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144791 |
ttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccaga |
42144692 |
T |
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| Q |
119 |
gagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttcagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144691 |
gagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttcagtt |
42144592 |
T |
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| Q |
219 |
cctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggt |
283 |
Q |
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| T |
42144591 |
cctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggt |
42144527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 42175910 - 42175646
Alignment:
| Q |
19 |
ttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccaga |
118 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
42175910 |
ttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccaga |
42175811 |
T |
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| Q |
119 |
gagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttcagtt |
218 |
Q |
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| T |
42175810 |
gagaaaatgtgttgctgatttcttacaagaagtaacatccaagaaagaccaacaacaatactggtttagaagagatgaaccttatagatatgtttcagtt |
42175711 |
T |
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| Q |
219 |
cctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggt |
283 |
Q |
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| T |
42175710 |
cctgaattttttgagttctttcattcatttcatattggagaggaaattgcggcagagattaaggt |
42175646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 42156738 - 42156474
Alignment:
| Q |
19 |
ttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccaga |
118 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||||| || |
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| T |
42156738 |
ttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctga |
42156639 |
T |
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| Q |
119 |
gagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttcagtt |
218 |
Q |
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| T |
42156638 |
gagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgtttcagtt |
42156539 |
T |
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| Q |
219 |
cctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggt |
283 |
Q |
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| T |
42156538 |
cctgaatttgttgatttctttcattcatttcatattggagaagaaattgcggcagaacttaaggt |
42156474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 42135658 - 42135417
Alignment:
| Q |
19 |
ttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccaga |
118 |
Q |
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|||| |||||||| || ||||||||||||||||| ||||| ||||| || || ||||||||| || |||| || ||| || || || | ||||| |
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| T |
42135658 |
ttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaaaatgtgttacagttttttgaaaccatcggtttcaaatgtcctcc |
42135559 |
T |
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| Q |
119 |
gagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttcagtt |
218 |
Q |
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|||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
42135558 |
aagaaaaggagtagctgattttttacaagaagtaacatccaaaaaagaccaacaacaatattggtttagaagagataaaccttataaatatgtttcagtt |
42135459 |
T |
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| Q |
219 |
cctgaatttgttgatttctttcattcatttcatattggagag |
260 |
Q |
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| T |
42135458 |
tctgaatttgttgattcctttgattcatttcacattggagag |
42135417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 34144516 - 34144416
Alignment:
| Q |
24 |
gacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtccagagagaa |
123 |
Q |
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|||||||| || |||| ||||| |||||| |||| |||||||| | |||||||||||| ||||||| ||||||| ||| ||||| ||||| ||||||| |
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| T |
34144516 |
gacattatcctacttt-agaagctcaaattgtattccaaggtccacatgaaaatgtgcttcagttctttgaatacataggttttagatgtcccgagagaa |
34144418 |
T |
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| Q |
124 |
aa |
125 |
Q |
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|| |
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| T |
34144417 |
aa |
34144416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 2151485 - 2151409
Alignment:
| Q |
76 |
atgtgctagagttcttcgaatacacaggctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagta |
152 |
Q |
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| T |
2151485 |
atgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaagaagta |
2151409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 2163725 - 2163683
Alignment:
| Q |
110 |
gtgtccagagagaaaaggtgttgctgatttcttacaagaagta |
152 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||| |
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| T |
2163725 |
gtgtcctgaaagaaaaggagttgctgatttcttacaagaagta |
2163683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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