View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1711_high_61 (Length: 273)
Name: NF1711_high_61
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1711_high_61 |
| |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 49485307 - 49485566
Alignment:
Q |
1 |
tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
49485307 |
tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc |
49485406 |
T |
|
Q |
101 |
atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatcattagttttaatcatgctgaga |
200 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
49485407 |
atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatcattagttttaatcatgctgaga |
49485506 |
T |
|
Q |
201 |
atgtttatgtcagaagcatctgagggaattttccctgctatcaattcaaacattattact |
260 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
49485507 |
atgtttatgtcagaagcatctgagggaatttgccctgctatcaattcaaacattattact |
49485566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 49701817 - 49701992
Alignment:
Q |
1 |
tcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgacc |
100 |
Q |
|
|
||||||||||||| |||||||| ||| | |||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
49701817 |
tcttcaagagaagaaagtccccttttac---ggatatggtatttatgaagataacgaaaaattcttgagaggagcttggtcataattttgtgatttgacc |
49701913 |
T |
|
Q |
101 |
atcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaatca |
179 |
Q |
|
|
||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
T |
49701914 |
atctttcaagtagttctctcaacaaaagttcatctttcttttctctcaaagatggcagaacctaatgataagaaaatca |
49701992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 49532081 - 49532185
Alignment:
Q |
75 |
cttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaa |
174 |
Q |
|
|
|||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||| ||| ||||||| ||||| |||||||||||||||||| |
|
|
T |
49532081 |
cttggtcatagttttgtgaattgaccatcttccgagcagttctctcaacaaaagttcatctttctttcctctcaacgatggcagaacctagtgataagaa |
49532180 |
T |
|
Q |
175 |
aatca |
179 |
Q |
|
|
||||| |
|
|
T |
49532181 |
aatca |
49532185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 49521087 - 49521206
Alignment:
Q |
77 |
tggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgataagaaaa |
176 |
Q |
|
|
|||||||| |||| ||||||||||||||| || ||||||||||| ||| ||||||||||| ||| ||||||| ||||| ||||||||||||| |||||| |
|
|
T |
49521087 |
tggtcatagttttctgatttgaccatctttggaccagttctctcaacaaaagttcatctttctttcctctcaatgatggcagaacctagtgattagaaaa |
49521186 |
T |
|
Q |
177 |
tc--attagttttaatcatg |
194 |
Q |
|
|
|| |||||||||||||||| |
|
|
T |
49521187 |
tcatattagttttaatcatg |
49521206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 55071068 - 55070939
Alignment:
Q |
46 |
tcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctc |
145 |
Q |
|
|
|||||||| ||||||| | |||||||| || ||||||||| | ||| || |||| ||||| | ||||||||||||| ||| || ||||| || ||||||| |
|
|
T |
55071068 |
tcaagataccaaaaaacttttgagaggcgcctggtcataactatgtaatctgactatcttctaagcagttctctcaacaaaaggtcatccttcttttctc |
55070969 |
T |
|
Q |
146 |
tcaaagatggaagaacctagtgataagaaa |
175 |
Q |
|
|
||||||||| |||||||| | |||||||| |
|
|
T |
55070968 |
ccaaagatggcagaacctattaataagaaa |
55070939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 55066740 - 55066629
Alignment:
Q |
64 |
cttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacct |
163 |
Q |
|
|
||||||||| | |||||| ||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||||| |||||| || ||||||||| |||| |
|
|
T |
55066740 |
cttgagaggcgtttggtcgtaattttgtaatttgaccatcttctgaacagttctctcaacaaaggttcatcttgcttttcttgcagagatggaag-acct |
55066642 |
T |
|
Q |
164 |
agtgataagaaaa |
176 |
Q |
|
|
| | ||||||||| |
|
|
T |
55066641 |
attaataagaaaa |
55066629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 50240198 - 50240273
Alignment:
Q |
87 |
tttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc |
162 |
Q |
|
|
||||||||||| ||||||| |||||| |||||| | ||||||||||||||| ||| ||| |||||||| |||||| |
|
|
T |
50240198 |
tttgtgatttggccatcttctgagcaattctcttaacaagagttcatctttctttcctcgtaaagatggcagaacc |
50240273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14193 times since January 2019
Visitors: 8375