View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_64 (Length: 266)
Name: NF1711_high_64
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 46845971 - 46846209
Alignment:
| Q |
18 |
agctacaccagttatctattcacctgtttacaaacaattctttcattctaagcttttgttcaattcaattcaattgaatctttgaagatggccaagagaa |
117 |
Q |
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| T |
46845971 |
agctacaccagttatctattcacctgtttacaaacaattctttcattctaagcttttgttcaattcaattcaattgaatctttgaagatggccaagagaa |
46846070 |
T |
|
| Q |
118 |
atgttgctgctaattctcctcttgagagaactagcttgtcttatctggaccagaggttggccatggccaagcgctgttctcatggtaatgcatactttac |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46846071 |
atgttgctgctaattctcctcttgagagaaccagcttggcttatctggaccagaggttggccatggccaagcgctgttctcatggtaatgcatactttac |
46846170 |
T |
|
| Q |
218 |
taacaaatcaatgtataatgtaatctttggtttcctttg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
46846171 |
taacaaatcaatgtataatgtaatctttggtttcctttg |
46846209 |
T |
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