View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1711_high_68 (Length: 250)

Name: NF1711_high_68
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1711_high_68
NF1711_high_68
[»] chr1 (8 HSPs)
chr1 (13-250)||(48653492-48653729)
chr1 (23-246)||(48617736-48617959)
chr1 (59-250)||(11547603-11547794)
chr1 (38-250)||(48661906-48662118)
chr1 (54-158)||(48667587-48667691)
chr1 (26-174)||(48629286-48629434)
chr1 (56-250)||(48585699-48585893)
chr1 (56-249)||(48640273-48640466)
[»] chr3 (1 HSPs)
chr3 (38-250)||(19665107-19665319)
[»] chr8 (2 HSPs)
chr8 (68-250)||(27224342-27224524)
chr8 (38-249)||(27228546-27228757)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 48653729 - 48653492
Alignment:
Q  13 aaaatcatcgaagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653729 aaaatcatcgaagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaag 48653630  T
Q  113 tgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactc 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653629 tgtgttgctgcaaagggtgcttctgtcattttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactc 48653530  T
Q  213 caattggtgatggttcactcacttttgagttctttgat 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48653529 caattggtgatggttcactcacttttgagttctttgat 48653492  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 48617736 - 48617959
Alignment:
Q  23 aagaaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctg 122  Q
    ||||||||| |||| |||||   || |||| |||| ||||| ||||||||||||||||||||||| || ||| | ||||| |||||||||||| ||||||    
T  48617736 aagaaaatgggatccgaagcaaacactcatatccttcttatctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctg 48617835  T
Q  123 caaagggtgcttctgtcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtga 222  Q
    ||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  48617836 caaagggtgcttctgtcatcttcatcacaacagagaaagctggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtga 48617935  T
Q  223 tggttcactcacttttgagttctt 246  Q
    |||||| || ||||||||||||||    
T  48617936 tggttctcttacttttgagttctt 48617959  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 11547794 - 11547603
Alignment:
Q  59 cttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaa 158  Q
    ||||| |||| ||||| |||||||||||| || ||| | |||||  ||||||||||| ||||||||||||||||||||||||| ||||| |||||| | |    
T  11547794 cttatctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaaga 11547695  T
Q  159 gagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat 250  Q
     |||||| |||||||||  ||| |||||||||||| ||||||||||| ||||  |||| ||| ||||||| |||||||||||||||||||||    
T  11547694 aagctggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgat 11547603  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 48662118 - 48661906
Alignment:
Q  38 gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg 137  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||||||| || ||| | ||||| |||| ||||||| |||||||||| ||||| ||||    
T  48662118 gaagctcccattcatatcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctg 48662019  T
Q  138 tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt 237  Q
    |||||||||  |||||||| | |||||| ||||||||  ||| |||| || ||||||   | |||| |   ||||| || ||||||||||| |||| |||    
T  48662018 tcattttcaccacaacagagaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcatttt 48661919  T
Q  238 tgagttctttgat 250  Q
     ||||||||||||    
T  48661918 cgagttctttgat 48661906  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 48667691 - 48667587
Alignment:
Q  54 tcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaac 153  Q
    |||||||| |||||| |||||||||||||||||| || ||| | ||||| ||||  || ||| ||||||||||||||||||||||||| ||||| |||||    
T  48667691 tcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaac 48667592  T
Q  154 agaaa 158  Q
    |||||    
T  48667591 agaaa 48667587  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 48629434 - 48629286
Alignment:
Q  26 aaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaa 125  Q
    |||||| |||| |||| |||| ||||| |||| ||| |||||| |||||||||||||||||| || ||| | ||||| |||| ||| ||| |||||||||    
T  48629434 aaaatgggatccgaagttccccttcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaa 48629335  T
Q  126 agggtgcttctgtcattttcatgacaacagaaagagctggaaaagacat 174  Q
    ||||||| |||||||| || |  |||||||| | ||| || ||||||||    
T  48629334 agggtgcctctgtcatctttactacaacagagaaagcaggcaaagacat 48629286  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 48585893 - 48585699
Alignment:
Q  56 ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacag 155  Q
    |||||| | |||| |||||||||||||||||| || | | |  || | |||| ||||| | ||||||||||||||||  |||| || ||||  |||||||    
T  48585893 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 48585794  T
Q  156 aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat 250  Q
    | |  ||||| ||| ||||  || ||| ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| ||||||||||||    
T  48585793 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgat 48585699  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 48640466 - 48640273
Alignment:
Q  56 ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacag 155  Q
    |||||| | |||| |||||||||||||||||| || | | |  || | |||| ||||| | ||||||||||||||||  |||| || ||||  |||||||    
T  48640466 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 48640367  T
Q  156 aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttga 249  Q
    | |  ||||| ||| ||||  || ||| ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| |||||||||||    
T  48640366 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttga 48640273  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 19665107 - 19665319
Alignment:
Q  38 gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg 137  Q
    ||||| ||||||||  |||||||||| || |||||||||||||||||||| || ||| | ||||| |||||||||||| |||||||||||||| |||| |    
T  19665107 gaagcacccattcacatcctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcag 19665206  T
Q  138 tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt 237  Q
    |||| ||||| || ||||| | |||||| ||||||||   ||||||||||||||||| | | |||||| |||||||||| ||||||||||| |||| |||    
T  19665207 tcatcttcatcactacagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcatttt 19665306  T
Q  238 tgagttctttgat 250  Q
      | |||||||||    
T  19665307 ccacttctttgat 19665319  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 250
Target Start/End: Complemental strand, 27224524 - 27224342
Alignment:
Q  68 tatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatgacaacagaaagagctggaa 167  Q
    |||||||||||||||||||| |||||| ||||||| |||| ||||||| ||||  |||||||| ||||||| || ||||| |||||||| | |||||| |    
T  27224524 tatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggca 27224425  T
Q  168 aagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgat 250  Q
    ||||  | |||||||||||||| |||| |||||||| | ||| |||| ||||| ||||||| ||||| ||| |||||||||||    
T  27224424 aagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgat 27224342  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 27228757 - 27228546
Alignment:
Q  38 gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg 137  Q
    |||||||||||  || | |||||| | || |||||||||||||||||||| |||||| |||||||  ||| ||||||| ||||  |||||||| ||||||    
T  27228757 gaagctcccatcaatattctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctg 27228658  T
Q  138 tcattttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttt 237  Q
    | || ||||| ||||| || | |||||| | |||  | ||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||| ||| | ||    
T  27228657 ttatcttcatcacaactgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcatt 27228558  T
Q  238 tgagttctttga 249  Q
     |||||||||||    
T  27228557 cgagttctttga 27228546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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