View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_7 (Length: 567)
Name: NF1711_high_7
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 227 - 545
Target Start/End: Original strand, 4783291 - 4783619
Alignment:
| Q |
227 |
caacacttgtttcccttcctaagtagtgagagctttatcttaattctctccaaaataatcaagagaattttacggtttctcttctcttaccctaattata |
326 |
Q |
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| T |
4783291 |
caacacttgtttcccttcctaaatagtgagagctttatcttaattctctccaaaataatcaagagaattttactgtttctcttctcttactctaattata |
4783390 |
T |
|
| Q |
327 |
atttttcttaaaacaaacaaatccttaaagtctgtgaatatccaaatatattaatatttaatctaatatatattttttgcaactaaatactctatctagt |
426 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
4783391 |
atttttcttaaaacaaacatatcc-taaagtctgtgaatatacaaatatattaatatataatctaaaatatattttttgcaagtaaatactctatttagt |
4783489 |
T |
|
| Q |
427 |
atttacc-nnnnnnnnnnctctatctagtcattttt-----------ataagttaacaaaaattgatgcatttatttagtaaataatgtaggaaaattgt |
514 |
Q |
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| T |
4783490 |
atttaccaaaaaaaacaactctatctagtaatttttacaataaacaaatgagttaataaaaattgatgtatttatttagtgaataatgtaggaaaattgt |
4783589 |
T |
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| Q |
515 |
tgttgacatatatgcaaaaggctgagaaaca |
545 |
Q |
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| T |
4783590 |
tgttgacacaaatgc-aaaggctgagaaaca |
4783619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 4783072 - 4783113
Alignment:
| Q |
88 |
gctttacatgataaaataatctctcttacaatgagtgttatg |
129 |
Q |
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| T |
4783072 |
gctttacatgataaaataatatctcttacgatgagtgttatg |
4783113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 4782992 - 4783022
Alignment:
| Q |
54 |
tacactatgtccaccttctagtatgtagagg |
84 |
Q |
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| T |
4782992 |
tacactatgtccaccttctagtatgtagagg |
4783022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 545
Target Start/End: Original strand, 27113974 - 27114014
Alignment:
| Q |
504 |
aggaaaattgttgttgacatatatgcaaaaggctgagaaaca |
545 |
Q |
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| T |
27113974 |
aggaaaattgttgttgacacatatg-aaaaggctgagaaaca |
27114014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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