View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_71 (Length: 249)
Name: NF1711_high_71
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42010715 - 42010955
Alignment:
| Q |
1 |
ctatactttattctcaataggctaatttaaggtatgtctactcactaattatgactgcactttctttcattannnnnnnataaatagttcttaaatatta |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| | |||||||||| |||||||||| |
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| T |
42010715 |
ctataattcattctcaataggctaatttaaggtatgtctgctcacgaattatgactgcactatctttcatgatttttttataaatagttattaaatatta |
42010814 |
T |
|
| Q |
101 |
aatacattgtacagacaaaatgaaaaagactaatatgacatgcttttatatatattttaaatattaaatatgaaagagac---taattttttaggcactt |
197 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42010815 |
aatacattgtacagacaaaatgaaaaagactaatgtgacatgcttttatatatattttaaatattaaatatgaaagagactagtaattttttaggcactt |
42010914 |
T |
|
| Q |
198 |
aattaatggtttacannnnnnnctttggtaaaacacttcat |
238 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
42010915 |
aattaatggtttacatttttttctttggtaaaacacttcat |
42010955 |
T |
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