View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_72 (Length: 248)
Name: NF1711_high_72
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 30810504 - 30810610
Alignment:
| Q |
131 |
gtttaattgggaacttgtggttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttc |
230 |
Q |
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| T |
30810504 |
gtttaattgggaacttgtggttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttc |
30810603 |
T |
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| Q |
231 |
tgttcat |
237 |
Q |
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| T |
30810604 |
tgttcat |
30810610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 30810369 - 30810469
Alignment:
| Q |
20 |
ggaagagtaatgttattgatgctatgttgtttgtgtttggaaaacgagccaagcaggtgcgtttttgagaatattctagaaagtaattcgtgcttggaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30810369 |
ggaagagtaatgttattgatgctatgttgtttgtgtttggaaaacgagccaagcaggtgcgtttttgagaatattctagaaagtaattcgtgcttggaaa |
30810468 |
T |
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| Q |
120 |
g |
120 |
Q |
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| T |
30810469 |
g |
30810469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 36130417 - 36130500
Alignment:
| Q |
151 |
ttgcagatgagattgaataaagtttcggagcttatacataattctagcaatcatcagaatttggatagtgctggggtttctgtt |
234 |
Q |
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||||||| | ||||||| |||||||||||||||||||| ||||||| | |||| || |||||||||||||||| |||||||||| |
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| T |
36130417 |
ttgcagaggcgattgaacaaagtttcggagcttatacacaattctaccgatcaccacaatttggatagtgctgaggtttctgtt |
36130500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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