View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_high_76 (Length: 246)
Name: NF1711_high_76
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_high_76 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10031885 - 10031655
Alignment:
| Q |
1 |
attataaaatatcataatagaactcaagctataagtatttatctgtactttatttcacacnnnnnnn-gtatttatttctaaattatttttatagttaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10031885 |
attataaaatatcataatagaactcaagctataagtatttatttgtactttatttcacacaaaaaaaagtatttatttctaaattatttttatagttaaa |
10031786 |
T |
|
| Q |
100 |
gagaaatttcatatttttacatacgttgtaagttcatttcataaatgtttttggagaatttatttatataatcattaatcatggatcaatgacataatag |
199 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10031785 |
gagaaatttcatatttttacataagttgtaagttcatttcataaatgtttttggagaatttatttatataatcattaatcatggatcaatgacataatag |
10031686 |
T |
|
| Q |
200 |
atctgcaacgaacttaagatcaacactctct |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
10031685 |
atctgcaacgaacttaagatcaacactctct |
10031655 |
T |
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